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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTTGATGATTGTTTTGACAGAGTGTGGATGTTAATTTGATAATGACGGATTATTCCATGCCGGGGATGACAGGATACGAATTGCTCAAAAAGATTAAGgtgagaaatgataatgatttttgttattattttgattttggtttaatttcttgtcgaagattaacagaagagaagatagaattattgatattttcctgatttattagtagtggttttcccccttttctccctgatttttaattctctttgttaatatctgcag

Basic information

species Glycine max
transcript GLYMA06G19870.3
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G19870.3 (Glycine max), 5'ss of exon 1
lower sequence: AT3G48100.1 (Arabidopsis thaliana), 5'ss of exon 3
TATTTGATGATTGTTTTGACAGAGTGTGGATGTTAATTTGATAATGACGGATTATTCCATGCCGGGGATGACAGGATACGAATTGCTCAAAAAGATTAAGgtgagaaatgataatgatttttgttattattttgattttggtttaatttct----tgtcgaagattaacagaagagaagatagaattattgatattttcctgatttattagtagtggttttcccccttttctccctgatttttaattctctttgttaatatctgcag
                        | || |  |||||||||||||||||||||| || ||||| |||||||| ||||| ||| | || || ||||| || || ||   || | ||||||    |  ||      | ||    | || ||||    || |||| |  ||   || | || ||  | || ||||| |  || || |||||   |  ||   ||                                              
----------------------GATCTGAAGATTAATTTGATAATGACGGATTACTCTATGCCTGGGATGACTGGATATGAACTACTGAAGAAGATCAAAgtaagttttgttgatgattcaattgttttcacaaaattaaaatgaagttctgatttgacgaaaaaaaatttaaaaaaaaatgaagtt-ttgatctaatcttg-tttatggattttgaactttttaacag--------------------------------------

upper sequence: GLYMA06G19870.3 (Glycine max), 5'ss of exon 1
lower sequence: Vv17s0000g07580.t01 (Vitis vinifera), 5'ss of exon 3
TATTTGATGATTGTTTTGACAGAGTGTGGATGTTAATTTGATAATGACGGATTATTCCATGCCGGGGATGACAGGATACGAATTGCTCAAAAAGATTAAGgtgagaaatgataatgatttttgttattattttgattttggtttaatttcttgtcgaagattaacagaagagaagatagaattattgatattttcctgatttattagtagtggttttcccccttttctccctgatttttaattctctttgttaatatctgcag
                       || || | || ||| |||| |||||||| ||||| ||||| ||||||||||| || || |||||||| ||||| |||||  || ||  |   |  |||  | | |    |  | | ||| |  ||  |||  |   |    ||  | || | ||| |||      |  || |   ||||  | ||                                                       
----------------------GGTTTGAAGGTGAATCTGATCATGACGGACTATTCTATGCCTGGGATGACAGGGTATGAGTTGCTCAAGAAGATCAAGgtttgatatt-tgccg--tttgataaattgcctcttgtgggtctgcttggttgctgggaaaacccatgaaaggaaatacaatc-----tggttcctccattttatggt-------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208024142|gb|GD824206.1|GD824206
EST:     GATGACAGGATACGAATTGCTCAAAAAGATTAAG                         GAGTCATCTGTTTTTAGAGAGGTTCCAGTGGTGGTTATGTCGTCTGAGAAT
genomic: GATGACAGGATACGAATTGCTCAAAAAGATTAAGgtgagaaatg ... atatctgcagGAGTCATCTGTTTTTAGAGAGGTTCCAGTGGTGGTTATGTCGTCTGAGAAT
EST: gi|209712936|gb|BW684228.1|BW684228
EST:     ATTATTCCATGCCGGGGATGACAGGATACGAATTGCTCAAAAAGATTAAG                         GAGTCATCTGTTTTTAGAGAGGTTCCAGT
genomic: ATTATTCCATGCCGGGGATGACAGGATACGAATTGCTCAAAAAGATTAAGgtgagaaatg ... atatctgcagGAGTCATCTGTTTTTAGAGAGGTTCCAGT
EST: gi|208270232|gb|GE070862.1|GE070862
EST:     GCCGGGGATGACAGGATACGAATTGCTCAAAAAGATTAAG                         GAGTCATCTGTTTTTAGAGAGGTTCCAGTGGTGGTTATGTCGTCTGAGAAT
genomic: GCCGGGGATGACAGGATACGAATTGCTCAAAAAGATTAAGgtgagaaatg ... atatctgcagGAGTCATCTGTTTTTAGAGAGGTTCCAGTGGTGGTTATGTCGTCTGAGAAT
EST: gi|22927155|gb|BU544294.1|BU544294
EST:     ATTATTCCATGCCGGGGATGACAGGATACGAATTGCTCAAAAAGATTAAG                         GAGTCATCTGTTTNNNGAGAGGTTCCAGTGGTGGTTATGTCGTCTGAGAAT
genomic: ATTATTCCATGCCGGGGATGACAGGATACGAATTGCTCAAAAAGATTAAGgtgagaaatg ... atatctgcagGAGTCATCTGTTTTTAGAGAGGTTCCAGTGGTGGTTATGTCGTCTGAGAAT
EST: gi|207701327|gb|GD683314.1|GD683314
EST:     GCCGGGGATGACAGGATACGAATTGCTCAAAAAGATTAAG                         GAGTCATCTGTTTTTAGAGAGGTTCCAGTGGTGGTTATGTCGTCTGAGAAT
genomic: GCCGGGGATGACAGGATACGAATTGCTCAAAAAGATTAAGgtgagaaatg ... atatctgcagGAGTCATCTGTTTTTAGAGAGGTTCCAGTGGTGGTTATGTCGTCTGAGAAT