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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAAGCTCCAGATTAAGGTTGACGACAAAACGGGGAAGATCGTCGATGCTCGCTTCAAAACCTTCGGTTGTGGATCCGCCATTGCTTCTTCCTCCGTCGgtaatgatattaattaattgatgtttgtgttagtttcaagtttgtgtttggctgttagggtttgtgcatttgtggtgtttgaatttttcgtttttttgtt...

Basic information

species Glycine max
transcript GLYMA06G19310.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G19310.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv01s0127g00450.t01 (Vitis vinifera), 5'ss of exon 1
ATGAAGCTCCAGATTAAGGTTGACGACAAAACGGGGAAGATCGTCGATGCTCGCTTCAAAACCTTCGGTTGTGGATCCGCCATTGCTTCTTCCTCCGTCGgtaatgatattaattaattgatgtttgtgttagttt---caagtttgtgtttggctgttagggtttgtgcatttgtggtgtttgaatttttcgtttttttgtt-
|||||||| || || ||||| || ||  |||| || ||||||||||||||| ||||||| ||||| ||||||||||||||||| || |||||||| || |||     |||| ||| ||| || ||| | ||   ||     |  |     |    |    |   ||| |  ||| ||    ||  |      |||   ||  | 
ATGAAGCTTCAAATCAAGGTCGATGATCAAACCGGAAAGATCGTCGATGCTTGCTTCAAGACCTTTGGTTGTGGATCCGCCATCGCCTCTTCCTCTGTTGgt--ccgtatttatttatttatttttcttttttcttacgtgaaatcaaaatgaaataaaggaaattgggattttctgaa--ttatacaaccggttcccttaatt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6566871|gb|AW234503.1|AW234503
EST:     TCGCTTCAAAACCTTCGGTTGTGGATCCGCCATTGCTTCTTCCTCCGTCG                         CTACTGAATGGGTGAAGGGAAAGCAAATGGAGGAAGTTTTGACCATTAAAA
genomic: TCGCTTCAAAACCTTCGGTTGTGGATCCGCCATTGCTTCTTCCTCCGTCGgtaatgatat ... ttctttgcagCTACTGAATGGGTGAAGGGAAAGCAAATGGAGGAAGTTTTGACCATTAAAA
EST: gi|193363052|gb|FK328816.1|FK328816
EST:     TCGCTTCAAAACCTTCGGTTGTGGATCCGCCATTGCTTCTTCCTCCGTCG                         CTACTGAATGGGTGAAGGGAAAGCAAATGGAGGAAGTTTTGACCATCAAAA
genomic: TCGCTTCAAAACCTTCGGTTGTGGATCCGCCATTGCTTCTTCCTCCGTCGgtaatgatat ... ttctttgcagCTACTGAATGGGTGAAGGGAAAGCAAATGGAGGAAGTTTTGACCATTAAAA
EST: gi|16105635|gb|BI893375.1|BI893375
EST:     TCGCTTCAAAACCTTCGGTTGTGGATCCGCCATTGCTTCTTCCTCCGTCG                         CTACTGAATGGGTGAAGGGAAAGCAAATGGAGGAAGTTTTGACCATTAAAA
genomic: TCGCTTCAAAACCTTCGGTTGTGGATCCGCCATTGCTTCTTCCTCCGTCGgtaatgatat ... ttctttgcagCTACTGAATGGGTGAAGGGAAAGCAAATGGAGGAAGTTTTGACCATTAAAA
EST: gi|298167282|gb|HO010721.1|HO010721
EST:     TCGCTTCAAAACCTTCGGTTGTGGATCCGCCATTGCTTCTTCCTCCGTCG                         CTACTGAATGGGTGAAGGGAAAGCAAATGGAGGAAGTTTTGACCATTAAAA
genomic: TCGCTTCAAAACCTTCGGTTGTGGATCCGCCATTGCTTCTTCCTCCGTCGgtaatgatat ... ttctttgcagCTACTGAATGGGTGAAGGGAAAGCAAATGGAGGAAGTTTTGACCATTAAAA
EST: gi|6566522|gb|AW234165.1|AW234165
EST:     TCGCTTCAAAACCTTCGGTTGTGGATCCGCCATTGCTTCTTCCTCCGTCG                         CTACTGAATGGGTGAAGGGAAAGCAAATGGAGGAAGTTTTGACCATTAAAA
genomic: TCGCTTCAAAACCTTCGGTTGTGGATCCGCCATTGCTTCTTCCTCCGTCGgtaatgatat ... ttctttgcagCTACTGAATGGGTGAAGGGAAAGCAAATGGAGGAAGTTTTGACCATTAAAA
EST: gi|31460265|gb|CD402233.1|CD402233
EST:     TCGCTTCAAAACCTTCGGTTGTGGATCCGCCATTGCTTCTTCCTCCGTCG                         CTACTGAATGGGTGAAGGGAAAGCAAATGGAGGAAGTTTTGACCATTAAAA
genomic: TCGCTTCAAAACCTTCGGTTGTGGATCCGCCATTGCTTCTTCCTCCGTCGgtaatgatat ... ttctttgcagCTACTGAATGGGTGAAGGGAAAGCAAATGGAGGAAGTTTTGACCATTAAAA
EST: gi|298174719|gb|HO014750.1|HO014750
EST:     TCGCTTCAAAACCTTCGGTTGTGGATCCGCCATTGCTTCTTCCTCCGTCG                         CTACTGAATGGGTGAAGGGAAAGCAAATGGAGGAAGTTTTGACCATTAAAA
genomic: TCGCTTCAAAACCTTCGGTTGTGGATCCGCCATTGCTTCTTCCTCCGTCGgtaatgatat ... ttctttgcagCTACTGAATGGGTGAAGGGAAAGCAAATGGAGGAAGTTTTGACCATTAAAA
EST: gi|254313658|gb|GR831287.1|GR831287
EST:     TCGCTTCAAAACCTTCGGTTGTGGATCCGCCATTGCTTCTTCCTCCGTCG                         CTACTGAATGGGTGAAGGGAAAGCAAATGGAGGAAGTTTTGACCATTAAAA
genomic: TCGCTTCAAAACCTTCGGTTGTGGATCCGCCATTGCTTCTTCCTCCGTCGgtaatgatat ... ttctttgcagCTACTGAATGGGTGAAGGGAAAGCAAATGGAGGAAGTTTTGACCATTAAAA
EST: gi|16343105|gb|BI968700.1|BI968700
EST:     TCGCTTCAAAACCTTCGGTTGTGGATCCGCCATTGCTTCTTCCTCCGTCG                         CTACTGAATGGGTGAAGGGAAAGCAAATGGAGGAAGTTTTGACCATTAAAA
genomic: TCGCTTCAAAACCTTCGGTTGTGGATCCGCCATTGCTTCTTCCTCCGTCGgtaatgatat ... ttctttgcagCTACTGAATGGGTGAAGGGAAAGCAAATGGAGGAAGTTTTGACCATTAAAA
EST: gi|20449069|gb|BQ253193.1|BQ253193
EST:     TCGCTTCAAAACCTTCGGTTGTGGATCCGCCATTGCTTCTTCCTCCGTCG                         CTACTGAATGGGTGAAGGGAAAGCAAATGGAGGAAGTTTTGACCATTAAAA
genomic: TCGCTTCAAAACCTTCGGTTGTGGATCCGCCATTGCTTCTTCCTCCGTCGgtaatgatat ... ttctttgcagCTACTGAATGGGTGAAGGGAAAGCAAATGGAGGAAGTTTTGACCATTAAAA
EST: gi|31459833|gb|CD401861.1|CD401861
EST:     TCGCTTCAAAACCTTCGGTTGTGGATCCGCCATTGCTTCTTCCTCCGTCG                         CTACTGAATGGGTGAAGGGAAAGCAAATGGAGGAAGTTTTGACCATTAAAG
genomic: TCGCTTCAAAACCTTCGGTTGTGGATCCGCCATTGCTTCTTCCTCCGTCGgtaatgatat ... ttctttgcagCTACTGAATGGGTGAAGGGAAAGCAAATGGAGGAAGTTTTGACCATTAAAA