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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGAGGAGAGTCAGAGCTCACTTGAAGAAAATCAACAAGCCTCCCGTCAAGACAATTCAGGCATCTTCATTTTATTTTTTTCTTTCTCTACAACCTATGgtgactgatgacagtgacacacactgttatttatgtatttattcttttctgtttgtttcttgtggtttagtgatgttgggggttttgttattttgttgcag

Basic information

species Glycine max
transcript GLYMA06G19020.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G19020.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv17s0000g08870.t01 (Vitis vinifera), 5'ss of exon 1
---------------------------------------GTTGAGGAGAGTCAGAGCTCACTTGAAGAAAATCAACAAGCCTCCCGTCAAGACAATTCAGGCATCTTCATTTTATTTTTTT-CTTTCTCTACAACCTATGgtgactgatgacagtgacacacact-gttatttatgtatttattcttttctgtttgtttcttgtggtttagtgatgttgggggttttgttattttgttgcag
                                       | ||| ||||||||||||  |  | | ||| |||||||||||| | ||||||||||||||||||  ||| | |  |  |  |  ||||| |   |  |  |     |  |||  |    | |   |    || |  ||  || || || ||     |                                              
GGCCAACCAGACTTTCCACCCAGGTCTACAGCTGCAGAAGCTGAAGAGAGTCAGAGCCTATCTCAGGAAGATCAACAAGCCTGCAGTCAAGACAATTCAGgcaatttcttgtcttaatggtgttttctatgtgaatttggtattttcttgatggctctaaaggttcaggatctgggtggttgtttttctcctgcag----------------------------------------------