Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTCATTGCTTCTAACTCAACAATTGAGATCTCACACTGCAATTCCTTCTTCTCCCAGAATCGgtgcgtcacattcttaaaactttgcgattctttttctcttcaatttctctgcatttttgtttatctatttatctatttatttacttttgggtctaaggtttaaggtttttttttttttttcatttag

Basic information

species Glycine max
transcript GLYMA06G17960.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192326892|gb|FK015134.1|FK015134
EST:     CACACTGCAATTCCTTCTTCTCCCAGAATCG                         GTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTT
genomic: CACACTGCAATTCCTTCTTCTCCCAGAATCGgtgcgtcaca ... tttcatttagGTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTT
EST: gi|192317518|gb|FK008970.1|FK008970
EST:     GAGATCTCACACTGCAATTCCTTCTTCTCCCAGAATCG                         GTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTT
genomic: GAGATCTCACACTGCAATTCCTTCTTCTCCCAGAATCGgtgcgtcaca ... tttcatttagGTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTT
EST: gi|209696468|gb|BW664017.1|BW664017
EST:     GAGATCTCACACTGCAATTCCTTCTTCTCCCAGAATCG                         GTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTT
genomic: GAGATCTCACACTGCAATTCCTTCTTCTCCCAGAATCGgtgcgtcaca ... tttcatttagGTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTT
EST: gi|151396982|gb|EV266855.1|EV266855
EST:     AACTCAACAATTGAGATCTCACACTGCAATTCATTCTTCTCCCAGAATCG                         GTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTT
genomic: AACTCAACAATTGAGATCTCACACTGCAATTCCTTCTTCTCCCAGAATCGgtgcgtcaca ... tttcatttagGTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTT
EST: gi|208141894|gb|GD939582.1|GD939582
EST:     GAGATCTCACACTGCAATTCCTTCTTCTCCCAGAATCG                         GTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTT
genomic: GAGATCTCACACTGCAATTCCTTCTTCTCCCAGAATCGgtgcgtcaca ... tttcatttagGTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTT
EST: gi|6502012|gb|AW203385.1|AW203385
EST:     CACACTGCAATTCCTTCTTCTCCCAGAATCG                         GTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTT
genomic: CACACTGCAATTCCTTCTTCTCCCAGAATCGgtgcgtcaca ... tttcatttagGTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTT
EST: gi|209722634|gb|BW682710.1|BW682710
EST:     AACAATTGAGATCTCACACTGCAATTCCTTCTTCTCCCAGAATCG                         GTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTT
genomic: AACAATTGAGATCTCACACTGCAATTCCTTCTTCTCCCAGAATCGgtgcgtcaca ... tttcatttagGTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTT
EST: gi|207685792|gb|GD669124.1|GD669124
EST:     AACAATTGAGATCTCACACTGCAATTCCTTCTTCTCCCAGAATCG                         GTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCACGAATCGTTT
genomic: AACAATTGAGATCTCACACTGCAATTCCTTCTTCTCCCAGAATCGgtgcgtcaca ... tttcatttagGTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTT
EST: gi|9440180|gb|BE440690.1|BE440690
EST:     CACACTGCAATTCCTTCTTCTCCCAGAATCG                         GTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTT
genomic: CACACTGCAATTCCTTCTTCTCCCAGAATCGgtgcgtcaca ... tttcatttagGTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTT
EST: gi|17023638|gb|BM094672.1|BM094672
EST:     TTCCTTCTTCTCCCAGAATCG                         GTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTT
genomic: TTCCTTCTTCTCCCAGAATCGgtgcgtcaca ... tttcatttagGTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTT
EST: gi|120532998|gb|EH261131.1|EH261131
EST:     AACTCAACAATTGAGATCTCACACTGCAATTCCTTCTTCTCCCAGAATCG                         GTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTT
genomic: AACTCAACAATTGAGATCTCACACTGCAATTCCTTCTTCTCCCAGAATCGgtgcgtcaca ... tttcatttagGTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTT
EST: gi|298182845|gb|HO031580.1|HO031580
EST:     AACAATTGAGATCTCACACTGCAATTCCTTCTTCTCCCAGAATCG                         GTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTT
genomic: AACAATTGAGATCTCACACTGCAATTCCTTCTTCTCCCAGAATCGgtgcgtcaca ... tttcatttagGTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTT
EST: gi|254332573|gb|GR846511.1|GR846511
EST:     CTGCAATTCCTTCTTCTCCCAGAATCG                         GTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTT
genomic: CTGCAATTCCTTCTTCTCCCAGAATCGgtgcgtcaca ... tttcatttagGTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTT
EST: gi|120533057|gb|EH261190.1|EH261190
EST:     AACTCAACAATTGAGATCTCACACTGCAATTCCTTCTTCTCCCAGAATCG                         GTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTT
genomic: AACTCAACAATTGAGATCTCACACTGCAATTCCTTCTTCTCCCAGAATCGgtgcgtcaca ... tttcatttagGTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTT
EST: gi|209710868|gb|BW653629.1|BW653629
EST:     AACAATTGAGATCTCACACTGCAATTCCTTCTTCTCCCAGAATCG                         GTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTT
genomic: AACAATTGAGATCTCACACTGCAATTCCTTCTTCTCCCAGAATCGgtgcgtcaca ... tttcatttagGTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTT
EST: gi|298181007|gb|HO022446.1|HO022446
EST:     AACTCAACAATTGAGATCTCACACTGCAATTCCTTCTTCTCCCAGAATCG                         GTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTT
genomic: AACTCAACAATTGAGATCTCACACTGCAATTCCTTCTTCTCCCAGAATCGgtgcgtcaca ... tttcatttagGTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTT
EST: gi|213599779|gb|DB968429.1|DB968429
EST:     TCTCACACTGCAATTCCTTCTTCTCCCAGAATCG                         GTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTT
genomic: TCTCACACTGCAATTCCTTCTTCTCCCAGAATCGgtgcgtcaca ... tttcatttagGTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCTCATTGCTTCTAACTCAACAATTGAGATCTCACACTGCAATTCCTTCTTCTCCCAGAATCGgtgcgtcacattcttaaaactttgcgattctttttctcttcaatttctctgcatttttgtttatctatttatctatttatttacttttgggtctaaggtttaaggtttttttttttttttcatttag

- - - - - - - - - - - -  GAGATC