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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTATTTCCGTCTCTCGCTTGTGCTGCCTTCGTTTGCGTTTTTATCACAGgtaagcaagctccttcgattcacgatctcttcctctgaaatttgtattcccaaaacctatgctacacttttctatctgaattgctgaattctcttaacaa...

Basic information

species Glycine max
transcript GLYMA06G17930.4
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298175581|gb|HO018292.1|HO018292
EST:     ACTATTTCCGTCTCTCGCTTGTGCTGCCTTCGTTTGCGTTTTTATCACAG                         AGGAATTAACATATATATAGCAAGCATGGCAGTCACACTCTACGACCTTAG
genomic: ACTATTTCCGTCTCTCGCTTGTGCTGCCTTCGTTTGCGTTTTTATCACAGgtaagcaagc ... tattttgcagAGGAATTAACATATATATAGCAAGCATGGCAGTCACACTCTACGACCTTAG
EST: gi|7588414|gb|AW704210.1|AW704210
EST:     GCTTGTGCTGCCTTCGTTTGCGTTTTTATCACAG                         AGGAATTAACATATATATAGCAAGCATGGCAGTCACACTCTACGACCTTAG
genomic: GCTTGTGCTGCCTTCGTTTGCGTTTTTATCACAGgtaagcaagc ... tattttgcagAGGAATTAACATATATATAGCAAGCATGGCAGTCACACTCTACGACCTTAG
EST: gi|16106028|gb|BI893768.1|BI893768
EST:     CTCGCTTGTGCTGCCTTCGTTTGCGTTTTTATCACAG                         AGGAATTAACATATATATAGCAAGCATGGCAGTCACACTCTACGACCTTAG
genomic: CTCGCTTGTGCTGCCTTCGTTTGCGTTTTTATCACAGgtaagcaagc ... tattttgcagAGGAATTAACATATATATAGCAAGCATGGCAGTCACACTCTACGACCTTAG
EST: gi|213617811|gb|DB959395.1|DB959395
EST:     TTTCCGTCTCTCGCTTGTGCTGCCTTCGTTTGCGTTTTTATCACAG                         AGGAATTAACATATATATAGCAAGCATGGCAGTCACACTCTACGACCTTAG
genomic: TTTCCGTCTCTCGCTTGTGCTGCCTTCGTTTGCGTTTTTATCACAGgtaagcaagc ... tattttgcagAGGAATTAACATATATATAGCAAGCATGGCAGTCACACTCTACGACCTTAG
EST: gi|192328314|gb|FK020025.1|FK020025
EST:     GTCTCTCGCTTGTGCTGCCTTCGTTTGCGTTTTTATCACAG                         AGGAATTAACATATATATAGCAAGCATGGCAGTCACACTCTACGACCTTAG
genomic: GTCTCTCGCTTGTGCTGCCTTCGTTTGCGTTTTTATCACAGgtaagcaagc ... tattttgcagAGGAATTAACATATATATAGCAAGCATGGCAGTCACACTCTACGACCTTAG
EST: gi|298194444|gb|HO041092.1|HO041092
EST:     CTCTCGCTTGTGCTGCCTTCGTTTGCGTTTTTATCACAG                         AGGAATTAACATATATATAGCAAGCATGGCAGTCACACTCTACGACCTTAG
genomic: CTCTCGCTTGTGCTGCCTTCGTTTGCGTTTTTATCACAGgtaagcaagc ... tattttgcagAGGAATTAACATATATATAGCAAGCATGGCAGTCACACTCTACGACCTTAG
EST: gi|18040877|gb|BM309171.1|BM309171
EST:     TTGCGTTTTTATCACAG                         AGGAATTAACATATATATAGCAAGCATGGCAGTCACACTCTACGACCTTAG
genomic: TTGCGTTTTTATCACAGgtaagcaagc ... tattttgcagAGGAATTAACATATATATAGCAAGCATGGCAGTCACACTCTACGACCTTAG
EST: gi|7232756|gb|AW568109.1|AW568109
EST:     GCTGCCTTCGTTTGCGTTTTTATCACAG                         AGGAATTAACATATATATAGCAAGCATGGCAGTCACACTCTACGACCTTAG
genomic: GCTGCCTTCGTTTGCGTTTTTATCACAGgtaagcaagc ... tattttgcagAGGAATTAACATATATATAGCAAGCATGGCAGTCACACTCTACGACCTTAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACTATTTCCGTCTCTCGCTTGTGCTGCCTTCGTTTGCGTTTTTATCACAGgtaagcaagctccttcgattcacgatctcttcctctgaaatttgtattcccaaaacctatgctacacttttctatctgaattgctgaattctcttaacaa

- - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttcctc