Sequence
atgc intronic sequence ATGC exonic sequenceATGGCAGTCACACTCTACGACCTTAGCTCTTCCTCTGGGTTGAAGAAACTTGATGAGTACCTTCTCCCACGCAGTTACATCACCGGgtatgtcactgcttttatgcttcgtttgtatgttttttttttataaatcctcgtttcttaagtgataaacaagctttaatggctattacagtattaggaa...
Basic information
species | Glycine max |
transcript | GLYMA06G17930.3 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G17930.3 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G153569_T01 (Zea mays), 5'ss of exon 2
ATGGCAGTCACACTCTACGACCTTAGCTCTTCCTCTGGGTTGAAGAAACTTGATGAGTACCTTCTCCCACGCAGTTACATCACCGGgtatgtcactgcttttatgcttcgtttgtatgttttttttttataaatcctcgtttcttaagtgataaacaagctttaatggctattacagtattaggaa
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ATGGCCGTTTCTTTTGCAAATGTCAACGCCGAGGCAGGGCTGAAAAAGCTTGATGAGTACCTTCTCACTCGCAGCTACATCACTGGgtatgtgattggagcta--ctctatttgcacaatggtcata-acatttctactgaacttatgctgcattaatgtttctctag------------------
upper sequence: GLYMA06G17930.3 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G153569_T02 (Zea mays), 5'ss of exon 2
--------------ATGGCAGTCACACTCTACGACCTTAGCTCTTCCTCTGGGTTGAAGAAACTTGATGAGTACCTTCTCCCACGCAGTTACATCACCGGgtatgtcactgcttttatgcttcgtttgtatgttttttttttataaatcctcgtttcttaagtgataaacaagctttaatggctattacagtattaggaa
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TTTCTTGAGGGCAGATGGCCGTTTCTTTTGCAAATGTCAACGCCGAGGCAGGGCTGAAAAAGCTTGATGAGTACCTTCTCACTCGCAGCTACATCACTGGgtatgtgattggagcta--ctctatttgcacaatggtcata-acatttctactgaacttatgctgcattaatgtttctctag------------------
upper sequence: GLYMA06G17930.3 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G031545_T03 (Zea mays), 5'ss of exon 2
--------------ATGGCAGTCACACTCTACGACCTTAGCTCTTCCTCTGGGTTGAAGAAACTTGATGAGTACCTTCTCCCACGCAGTTACATCACCGGgtatgtcactgcttttatgcttcgtttgtatgttttttttttataaatcctcgtttcttaagtgataaacaagctttaatggctattacagtattaggaa
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TTTGTTGAGGGGTGATGGCGGTTTCTTTCGCAAACCTCAACTCCGAGGCAGGGCTTAAAAAGCTTGATGAGTACCTTCTCACTCGCAGCTACATCACTGGgtatgtgatt--cgagatactatgtttgcac-cacagttgtaacctttgcactgaacttacgctgcattaatctttctctag------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9259946|gb|BE348093.1|BE348093EST: GGGTTGAAGAAACTTGATGAGTACCTTCTCCCACGCAGTTACATCACCGG GTACCAAGCTACAAAGGATGATCTTACTGTTTATGCAGCTTTGCCAACTGC
genomic: GGGTTGAAGAAACTTGATGAGTACCTTCTCCCACGCAGTTACATCACCGGgtatgtcact ... ttctttttagGTACCAAGCTACAAAGGATGATCTTACTGTTTATGCAGCTTTGCCAACTGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGGCAGTCACACTCTACGACCTTAGCTCTTCCTCTGGGTTGAAGAAACTTGATGAGTACCTTCTCCCACGCAGTTACATCACCGGgtatgtcactgcttttatgcttcgtttgtatgttttttttttataaatcctcgtttcttaagtgataaacaagctttaatggctattacagtattaggaa
- - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - AAGAAA