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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTTGGCCATGGCGCAGGAAGTCGTCTGAGAAAAGTCCCGGTGAAACTGAGAGTTCTGGCTCAATGTCATCTCATTCTGAAAGATTTTTTGATGATCAGgtaccgcctttttagttgcatacacaatgagggatgcacataatttagatatttagataactatcatcaaacctaataaataactagattgaaagtgaat...

Basic information

species Glycine max
transcript GLYMA06G16560.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G16560.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G05270.1 (Arabidopsis thaliana), 5'ss of exon 2
GAGTTGGCCATGGCGCAGGAAGTCGTCTGAGAAAAGTCCCGGTGAAACTGAGAGTTCTGGCTCAATGTCATCTCATTCTGAAAGATTTTTTGATGATCAGgtaccgccttttta-gttgcatacacaatgagggatgcacataatttagatatttagataactatc---atcaaacctaataaataactagattgaaagtgaat------
||| |||  |||||| || ||||| ||||||||||||||||| |||||||||||| |||||||  | || ||||| ||||||||||| | ||| ||||||||  | | |||||    ||| |     |       ||    |  |  |    |  |  |||  ||    ||         |   |   ||  |||   |||||       
GAGCTGGTTATGGCGGAGAAAGTCATCTGAGAAAAGTCCCGGCGAAACTGAGAGTACTGGCTCTGTCTCTTCTCACTCTGAAAGATTCTCTGACGATCAGgttacacttttttgcaatgcctttgtgacattatgtgattgtggtgaaatcttggaattaatcattttgattgtgttatttggttttgtaatttgtgtgtgaaacttcag

upper sequence: GLYMA06G16560.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv07s0031g02720.t01 (Vitis vinifera), 5'ss of exon 4
GAGTTGGCCATGGCGCAGGAAGTCGTCTGAGAAAAGTCCCGGTGAAACTGAGAGTTCTGGCTCAATGTCATCTCATTCTGAAAGATTTTTTGATGATCAGgtac-cgcctttttagttgcatacacaatgagggatgcacataatttagatatttagataactatcatcaaacctaataaataactagattgaaagtgaat
||||||||  ||| | || ||||| |||||||| || || || |||||||| || || || ||||| || |||||||||||| |||| | |||||||||||||   ||  ||  | |||  |   |||  ||   |   | |    |    | | || |     |    |   |||  | | || ||  || |  |     
GAGTTGGCTGTGGAGGAGAAAGTCTTCTGAGAAGAGCCCTGGAGAAACTGAAAGCTCCGGATCAATTTCTTCTCATTCTGAACGATTCTCTGATGATCAGgtaagtgctcttcaatttgtgttggcaa-aagttgttttctttgccttttgactaaggtcttggtttgtatgactagaatacaattattttcactgcttga