Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACCTCATGGAACTCGAATTCGACGACCGTTACCGCAAGTGGCACTCCTGTGACCCCGCCGATCTCTTCCGCGCTCCCGTTCATAAATTCGTCCCCGAGgtccgcttccaagagcgctactcctctctatccctgtcgtctctgtgtgtttaattttaattttcttaattgtaatttgatttgtttgcgttttgaatcctag

Basic information

species Glycine max
transcript GLYMA06G16200.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G16200.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os03g06900.1 (Oryza sativa), 5'ss of exon 1
CCACCTCATGGAACTCGAATTCGACGACCGTTACCGCAAGTGGCACTCCTGTGACCCCGCCGATCTCTTCCGCGCTCCCGTTCATAAATTCGTCCCCGAGgtccgcttccaagagcgctact-cctctctatccctgtcgtctctgtgtgtttaattttaattttcttaattgtaatttgatttgtttgcgttttgaatcctag
 ||||||||||| ||||| ||||||||||| | ||||   |||||||| || |||||||| |||||||||| ||| |||||||  || | ||| ||| |||| ||  ||   |    || || ||  | | |||     ||   || |          |  |  | | ||||||    | |   ||   ||| | |  |  |  
GCACCTCATGGAGCTCGAGTTCGACGACCGGTTCCGCCGCTGGCACTCGTGCGACCCCGCTGATCTCTTCCACGCCCCCGTTCGCAAGTCCGTACCCCAGgtacggctctctgtttcctgctacccatttctccgaacagttggtgcgcaacgcgcggtg-tcctgtgaattgtgccctcaccagtc-acgtgtcgtttttt--

upper sequence: GLYMA06G16200.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G470438_T06 (Zea mays), 5'ss of exon 1
CCACCTCATGGAACTCGAATTCGACGACCGTTACCGCAAGTGGCACTCCTGTGACCCCGCCGATCTCTTCCGCGCTCCCGTTCATAAATTCGTCCCCGAGgtccgcttc-caagagcgctactcctctctatccctgtcgtctctgtgtgtttaattttaattttcttaattgtaatttgatttgtttgcgttttgaatcctag
|||||||||||||||||||||||| ||||| | ||||   ||||||||||| ||||||||||| || |||| ||| || || |  || | ||| ||| |||| | || | |     |||   ||| | | |    |             | |          | ||| |    |   |      ||| | |||| || |  | |
CCACCTCATGGAACTCGAATTCGATGACCGCTTCCGCCGCTGGCACTCCTGCGACCCCGCCGAACTTTTCCACGCCCCAGTCCGCAAGTCCGTGCCCCAGgtacactgctcgttctcgccgttccgcacgagaattacgccgaacagacggtgggcgcg---tctctgagccctgcgtatgacagttcgggttt-gattggttg

upper sequence: GLYMA06G16200.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G63920.1 (Arabidopsis thaliana), 5'ss of exon 1
CCACCTCATGGAACTCGAATTCGACGACCGTTACCGCAAGTGGCACTCCTGTGACCCCGCCGATCTCTTCCGCGCTCCCGTTCATAAATTCGTCCCCGAGgt---ccgcttccaagagcgc-tactcctctctatccctgtcgtctctgtgtgtttaattttaattttcttaattgtaatttgatttgtttgcgttttgaatcctag
|||||| ||||| || || |||| ||| ||||||||||| ||||||||||| ||||| || ||||| | ||  ||||| ||    |||  ||| ||||||||    |  ||  | | | |   || |||   |     |   ||| |  |||  ||  | |   |||   || || |   ||| ||  |||     |||  ||    
CCACCTGATGGAGCTTGAGTTCGCCGATCGTTACCGCAAATGGCACTCCTGCGACCCGGCAGATCTGTACCAAGCTCCGGTCATGAAACACGTTCCCGAGgtaattctattgtatgtgtgtgcacgcctaattgatt-taatgtcccattgtacttg-tatgcttttgtatagttctgggttg-ttgatttagtcattgcttc----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193579876|gb|FK537765.1|FK537765
EST:     GTGACCCCGCCGATCTCTTCCGCGCTCCCGTTCATAAATTCGTCCCCGAG                         GACAAGAAGGATATCAAGAGGACGCTGGAGGAGGAAGCCAGGAGGTGCCAG
genomic: GTGACCCCGCCGATCTCTTCCGCGCTCCCGTTCATAAATTCGTCCCCGAGgtccgcttcc ... tgaatcctagGACAAGAAGGATATCAAGAGGACGCTGGAGGAGGAAGCCAGGAGGTGCCAG