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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTAGCTACCTAGTTAGGGTTAGGGGTTCTGCGTTTCTGCGAAGATGACTAAGTTCAGGAAATTGGGTCGACCCACCGGTCACCGAATGTCCATGCTCCGgttagttcatactttcacttcattcgtatttttttttgtttcatttggtttgcagagaagctgaatcgtgtgttcccatttatctag

Basic information

species Glycine max
transcript GLYMA06G15680.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298180743|gb|HO022182.1|HO022182
EST:     AAGTTCAGGAAATTGGGTTGACCCACCGGTCACCGAATGTCCATGCTCCG                         AACCATGGCCTCGCAGTTGGTGAAGCACGAGCGCATCGAAACTACTGTTGC
genomic: AAGTTCAGGAAATTGGGTCGACCCACCGGTCACCGAATGTCCATGCTCCGgttagttcat ... atttatctagAACCATGGTCTCGCAGTTGGTGAAGCACGAGCGCATCGAAACTACTGTTGC
EST: gi|298170767|gb|HO015743.1|HO015743
EST:     AAGTTCAGGAAATTGGGTCGACCCACCGGTCACCGAATGTCCATGCTCCG                         AACCATGGTCTCGCAGTTGGTGAAGCACGAGCGCATCGAAACTACTGTTGC
genomic: AAGTTCAGGAAATTGGGTCGACCCACCGGTCACCGAATGTCCATGCTCCGgttagttcat ... atttatctagAACCATGGTCTCGCAGTTGGTGAAGCACGAGCGCATCGAAACTACTGTTGC
EST: gi|192322981|gb|FK016712.1|FK016712
EST:     AAGTTCAGGAAATTGGGTCGACCCACCGGTCACCGAATGTCCATGCTCCG                         AACCATGGTCTCGCAGTTGGTGAAGCACGAGCGCATCGAAACTACTGTTGC
genomic: AAGTTCAGGAAATTGGGTCGACCCACCGGTCACCGAATGTCCATGCTCCGgttagttcat ... atttatctagAACCATGGTCTCGCAGTTGGTGAAGCACGAGCGCATCGAAACTACTGTTGC
EST: gi|192306136|gb|FG993698.1|FG993698
EST:     AAGTTCAGGAAATTGGGTCGACCCACCGGTCACCGAATGTCCATGCTCCG                         AACCATGGTCTCGCAGTTGGTGAAGCACGAGCGCATCGAAACTACTGTTGC
genomic: AAGTTCAGGAAATTGGGTCGACCCACCGGTCACCGAATGTCCATGCTCCGgttagttcat ... atttatctagAACCATGGTCTCGCAGTTGGTGAAGCACGAGCGCATCGAAACTACTGTTGC
EST: gi|151396812|gb|EV266685.1|EV266685
EST:     AAGTTCAGGAAATTGGGTCGACCCACCGGTCACCGAATGTCCATGCTCCG                         AACCATGGTCTCGCAGTTGGTGAAGCACGAGCGCATCGAAACTACTGTTGC
genomic: AAGTTCAGGAAATTGGGTCGACCCACCGGTCACCGAATGTCCATGCTCCGgttagttcat ... atttatctagAACCATGGTCTCGCAGTTGGTGAAGCACGAGCGCATCGAAACTACTGTTGC
EST: gi|192306137|gb|FG993699.1|FG993699
EST:     AAGTTCAGGAAATTGGGTCGACCCACCGGTCACCGAATGTCCATGCTCCG                         AACCATGGTCTCGCAGTTGGTGAAGCACGAGCGCATCGAAACTACTGTTGC
genomic: AAGTTCAGGAAATTGGGTCGACCCACCGGTCACCGAATGTCCATGCTCCGgttagttcat ... atttatctagAACCATGGTCTCGCAGTTGGTGAAGCACGAGCGCATCGAAACTACTGTTGC
EST: gi|192317271|gb|FK010502.1|FK010502
EST:     AAGTTCAGGAAATTGGGTCGACCCACCGGTCACCGAATGTCCATGCTCCG                         AACCATGGTCTCGCAGTTGGTGAAGCACGAGCGCATCGAAACTACTGTTGC
genomic: AAGTTCAGGAAATTGGGTCGACCCACCGGTCACCGAATGTCCATGCTCCGgttagttcat ... atttatctagAACCATGGTCTCGCAGTTGGTGAAGCACGAGCGCATCGAAACTACTGTTGC
EST: gi|298174884|gb|HO014801.1|HO014801
EST:     AAGTTCAGGAAATTGGGTCGACCCACCGGTCACCGAATGTCCATGCTCCG                         AACCATGGTCTCGCAGTTGGTGAAGCACGAGCGCATCGAAACTACTGTTGC
genomic: AAGTTCAGGAAATTGGGTCGACCCACCGGTCACCGAATGTCCATGCTCCGgttagttcat ... atttatctagAACCATGGTCTCGCAGTTGGTGAAGCACGAGCGCATCGAAACTACTGTTGC
EST: gi|151407106|gb|EV276921.1|EV276921
EST:     AAGTTCAGGAAATTGGGTCGACCCACCGGTCACCGAATGTCCATGCTCCG                         AACCATGGTCTCGCAGTTGGTGAAGCACGAGCGCATCGAAACTACTGTTGC
genomic: AAGTTCAGGAAATTGGGTCGACCCACCGGTCACCGAATGTCCATGCTCCGgttagttcat ... atttatctagAACCATGGTCTCGCAGTTGGTGAAGCACGAGCGCATCGAAACTACTGTTGC
EST: gi|151395463|gb|EV265340.1|EV265340
EST:     AAGTTCAGGAAATTGGGTCGACCCACCGGTCACCGAATGTCCATGCTCCG                         AACCATGGTCTCGCAGTTGGTGAAGCACGAGCGCATCGAAACTACTGTTGC
genomic: AAGTTCAGGAAATTGGGTCGACCCACCGGTCACCGAATGTCCATGCTCCGgttagttcat ... atttatctagAACCATGGTCTCGCAGTTGGTGAAGCACGAGCGCATCGAAACTACTGTTGC
EST: gi|192317270|gb|FK010501.1|FK010501
EST:     AAGTTCAGGAAATTGGGTCGACCCACCGGTCACCGAATGTCCATGCTCCG                         AACCATGGTCTCGCAGTTGGTGAAGCACGAGCGCATCGAAACTACTGTTGC
genomic: AAGTTCAGGAAATTGGGTCGACCCACCGGTCACCGAATGTCCATGCTCCGgttagttcat ... atttatctagAACCATGGTCTCGCAGTTGGTGAAGCACGAGCGCATCGAAACTACTGTTGC
EST: gi|192299353|gb|FG990749.1|FG990749
EST:     AAGTTCAGGAAATTGGGTCGACCCACCGGTCACCGAATGTCCATGCTCCG                         AACCATGGTCTCGCAGTTGGTGAAGCACGAGCGCATCGAAACTACTGTTGC
genomic: AAGTTCAGGAAATTGGGTCGACCCACCGGTCACCGAATGTCCATGCTCCGgttagttcat ... atttatctagAACCATGGTCTCGCAGTTGGTGAAGCACGAGCGCATCGAAACTACTGTTGC
EST: gi|7588869|gb|AW704655.1|AW704655
EST:     AAGTTCAGGAAATTGGGTCGACCCACCGGTCACCGAATGTCCATGCTCCG                         AACCATGGTCTCGCAGTTGGTGAAGCACGAGCGCATCGAAACTACTGTTGC
genomic: AAGTTCAGGAAATTGGGTCGACCCACCGGTCACCGAATGTCCATGCTCCGgttagttcat ... atttatctagAACCATGGTCTCGCAGTTGGTGAAGCACGAGCGCATCGAAACTACTGTTGC