Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCTGTCTCTCAATGACCTCACCAATAACCACTTCTCTTCCAATACGCCACACACCGCCGCCAAAGTTTCCGTCTTTACCGTCAAATGCTCTTCTTCGGgtaccctctctctctctctctctctctttcggttttctttcgcaatacctttaaaaaaagttttctttcttcatggacccatttttttactgcatgaaaa...

Basic information

species Glycine max
transcript GLYMA06G15510.3
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151406343|gb|EV276158.1|EV276158
EST:     ACACACCGCCGCCAAAGTTTCCGTCTTTACCGTCAAATGCTCTTCTTCGG                         GTGGTGGAGAGAGGCCTTGGAAGAATTCAGATGCTAGACTTGTGCTTGAAG
genomic: ACACACCGCCGCCAAAGTTTCCGTCTTTACCGTCAAATGCTCTTCTTCGGgtaccctctc ... tgtgacatagGTGGTGGAGAGAGGCCTTGGAAGAATTCAGATGCTAGACTTGTGCTTGAAG
EST: gi|213614361|gb|DB966963.1|DB966963
EST:     ACACACCGCCGCCAAAGTTTCCGTCTTTACCGTCAAATGCTCTTCTTCGG                         GTGGTGGAGAGAGGCCTTGGAAGAATTCAGATGCTAGACTTGTGCTTGAAG
genomic: ACACACCGCCGCCAAAGTTTCCGTCTTTACCGTCAAATGCTCTTCTTCGGgtaccctctc ... tgtgacatagGTGGTGGAGAGAGGCCTTGGAAGAATTCAGATGCTAGACTTGTGCTTGAAG
EST: gi|298181786|gb|HO025961.1|HO025961
EST:     ACACGCCGCCGCCAAAGTTTCCGTCTTTACCGTCAAATGCTCTTCTTCGG                         GTGGTGGAGAGAGGCCTTGGAAGAATTCAGATGCTAGACTTGTGCTTGAAG
genomic: ACACACCGCCGCCAAAGTTTCCGTCTTTACCGTCAAATGCTCTTCTTCGGgtaccctctc ... tgtgacatagGTGGTGGAGAGAGGCCTTGGAAGAATTCAGATGCTAGACTTGTGCTTGAAG
EST: gi|19271025|gb|BM887281.1|BM887281
EST:     ACACACCGCCGCCAAAGTTTCCGTCTTTACCGTCAAATGCTCTTCTTCGG                         GTGGTGGAGAGAGGCCTTGGAAGAATTCAGATGCTAGACTTGTGCTTGAAG
genomic: ACACACCGCCGCCAAAGTTTCCGTCTTTACCGTCAAATGCTCTTCTTCGGgtaccctctc ... tgtgacatagGTGGTGGAGAGAGGCCTTGGAAGAATTCAGATGCTAGACTTGTGCTTGAAG
EST: gi|16284806|gb|BI946280.1|BI946280
EST:     ACACACCGCCGCCAAAGTTTCCGTCTTTACCGTCAAATGCTCTTCTTCGG                         GTGGTGGAGAGAGGCCTTGGAAGAATTCAGATGCTAAACTTGTGCTTGAAG
genomic: ACACACCGCCGCCAAAGTTTCCGTCTTTACCGTCAAATGCTCTTCTTCGGgtaccctctc ... tgtgacatagGTGGTGGAGAGAGGCCTTGGAAGAATTCAGATGCTAGACTTGTGCTTGAAG
EST: gi|298173478|gb|HO016814.1|HO016814
EST:     ACACACCGCCGCCAAAGTTTCCGTCTTTACCGTCAAATGCTCTTCTTCGG                         GTGGTGGAGAGAGGCCTTGGAAGAATTCAGATGCTAGACTTGTGCTTGAAG
genomic: ACACACCGCCGCCAAAGTTTCCGTCTTTACCGTCAAATGCTCTTCTTCGGgtaccctctc ... tgtgacatagGTGGTGGAGAGAGGCCTTGGAAGAATTCAGATGCTAGACTTGTGCTTGAAG
EST: gi|16996720|gb|BM086092.1|BM086092
EST:     ACACACCGCCGCCAAAGTTTCCGTCTTTACCGTCAAATGCTCTTCTTCGG                         GTGGTGGAGAGAGGCCTTGGAAGAATTCAGATGCTAGACTTGTGCTTGAAG
genomic: ACACACCGCCGCCAAAGTTTCCGTCTTTACCGTCAAATGCTCTTCTTCGGgtaccctctc ... tgtgacatagGTGGTGGAGAGAGGCCTTGGAAGAATTCAGATGCTAGACTTGTGCTTGAAG
EST: gi|16348135|gb|BI973730.1|BI973730
EST:     ACACACCGCCGCCAAAGTTTCCGTCTTTACCGTCAAATGCTCTTCTTCGG                         GTGGTGGAGAGAGGCCTTGGAAGAATTCAGATGCTAGACTTGTGCTTGAAG
genomic: ACACACCGCCGCCAAAGTTTCCGTCTTTACCGTCAAATGCTCTTCTTCGGgtaccctctc ... tgtgacatagGTGGTGGAGAGAGGCCTTGGAAGAATTCAGATGCTAGACTTGTGCTTGAAG
EST: gi|15589927|gb|BI674543.1|BI674543
EST:     ACACACCGCCGCCAAAGTTTCCGTCTTTACCGTCAAATGCTCTTCTTCGG                         GTGGTGGAGAGAGGCCTTGGAAGAATTCAGATGCTAGACTTGTGCTTGAAG
genomic: ACACACCGCCGCCAAAGTTTCCGTCTTTACCGTCAAATGCTCTTCTTCGGgtaccctctc ... tgtgacatagGTGGTGGAGAGAGGCCTTGGAAGAATTCAGATGCTAGACTTGTGCTTGAAG
EST: gi|209727965|gb|BW666685.1|BW666685
EST:     ACACACCGCCGCCAAAGTTTCCGTCTTTACCGTCAAATGCTCTTCTTCGG                         GTGGTGGAGAGAGGCCTTGGAAGAATTCAGATGCTAGACTTGTGCTTGAAG
genomic: ACACACCGCCGCCAAAGTTTCCGTCTTTACCGTCAAATGCTCTTCTTCGGgtaccctctc ... tgtgacatagGTGGTGGAGAGAGGCCTTGGAAGAATTCAGATGCTAGACTTGTGCTTGAAG
EST: gi|16283929|gb|BI945815.1|BI945815
EST:     ACACACCGCCGCCAAAGTTTCCGTCTTTACCGTCAAATGCTCTTCTTCGG                         GTGGTGGAGAGAGGCCTTGGAAGAATTCAGATGCTAGACTTGTGCTTGAAG
genomic: ACACACCGCCGCCAAAGTTTCCGTCTTTACCGTCAAATGCTCTTCTTCGGgtaccctctc ... tgtgacatagGTGGTGGAGAGAGGCCTTGGAAGAATTCAGATGCTAGACTTGTGCTTGAAG
EST: gi|19347243|gb|BM892123.1|BM892123
EST:     ACACACCGCCGCCAAAGTTTCCGTCTTTACCGTCAAATGCTCTTCTTCGG                         GTGGTGGAGAGAGGCCTTGGAAGAATTCAGATGCTAGACTTGTGCTTGAAG
genomic: ACACACCGCCGCCAAAGTTTCCGTCTTTACCGTCAAATGCTCTTCTTCGGgtaccctctc ... tgtgacatagGTGGTGGAGAGAGGCCTTGGAAGAATTCAGATGCTAGACTTGTGCTTGAAG