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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAATCTGGACGTTACTAAAGCAGCCCAGCCATCCACGCACCATTTTAAAAGCCAACACAGAAAGCACAGAACCACCACATCGTTGCCTTCCTCTAAACGgtgcgtcgtttaactccttcacgtaatatatcaatatcaccatgcttttttgtttctgtcgttctgttaagattcatgtgttttgtggattcttattctt...

Basic information

species Glycine max
transcript GLYMA06G15280.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209711272|gb|BW665324.1|BW665324
EST:     AGCCAACACAGAAGGCACAGAACCACCACATCGTTGCCTTCCTCTAAACG                         ATAAATTTTTGGGATTCTGAAACTAGTGATACATTTTCTTGCATGAAGGCA
genomic: AGCCAACACAGAAAGCACAGAACCACCACATCGTTGCCTTCCTCTAAACGgtgcgtcgtt ... ttctgtacagATAAATTTTTGGGATTCTGAAACTAGTGATACATTTTCTTGCATGAAGGCA
EST: gi|19453364|gb|BM954774.1|BM954774
EST:     AGCCAACACAGAAAGCACAGAACCACCACATCGTTGCCTTCCTCTAAACG                         ATAAATTTTTGGGATTCTGAAACTAGTGATACATTTTCTTGCATGAAGGCA
genomic: AGCCAACACAGAAAGCACAGAACCACCACATCGTTGCCTTCCTCTAAACGgtgcgtcgtt ... ttctgtacagATAAATTTTTGGGATTCTGAAACTAGTGATACATTTTCTTGCATGAAGGCA
EST: gi|209708218|gb|BW678588.1|BW678588
EST:     AGCCAACACAGAAAGCACAGAACCACCACATCGTTGCCTTCCTCTAAACG                         ATAAATTTTTGGGATTCTGAAACTAGTGATACATTTTCTTGCATGAAGGCA
genomic: AGCCAACACAGAAAGCACAGAACCACCACATCGTTGCCTTCCTCTAAACGgtgcgtcgtt ... ttctgtacagATAAATTTTTGGGATTCTGAAACTAGTGATACATTTTCTTGCATGAAGGCA
EST: gi|209723755|gb|BW665678.1|BW665678
EST:     AGCCAACACAGAAAGCACAGAACCACCACATCGTTGCCTTCCTCTAAACG                         ATAAATTTTTGGGATTCTGAAACTAGTGATACATTTTCTTGCATGAAGGCA
genomic: AGCCAACACAGAAAGCACAGAACCACCACATCGTTGCCTTCCTCTAAACGgtgcgtcgtt ... ttctgtacagATAAATTTTTGGGATTCTGAAACTAGTGATACATTTTCTTGCATGAAGGCA
EST: gi|11274442|gb|BF324795.1|BF324795
EST:     AGCCAACACAGAAAGCACAGAACCACCACATCGTTGCCTTCCTCTAAACG                         ATAAATTTTTGGGATTCTGAAACTAGTGATACATTTTCTTGCATGAAGGCA
genomic: AGCCAACACAGAAAGCACAGAACCACCACATCGTTGCCTTCCTCTAAACGgtgcgtcgtt ... ttctgtacagATAAATTTTTGGGATTCTGAAACTAGTGATACATTTTCTTGCATGAAGGCA
EST: gi|192303798|gb|FG998696.1|FG998696
EST:     AGCCAACACAGAAAGCACAGAACCACCACATCGTTGCCTTCCTCTAAACG                         ATAAATTTTTGGGATTCTGAAACTAGTGATACATTTTCTTGCATGAAGGCA
genomic: AGCCAACACAGAAAGCACAGAACCACCACATCGTTGCCTTCCTCTAAACGgtgcgtcgtt ... ttctgtacagATAAATTTTTGGGATTCTGAAACTAGTGATACATTTTCTTGCATGAAGGCA
EST: gi|151396657|gb|EV266530.1|EV266530
EST:     AGCCAACACAGAAAGCACAGAACCACCACATCGTTGCCTTCCTCTAAACG                         ATAAATTTTTGGGATTCTGAAACTAGTGATACATTTTCTTGCATGAAGGCA
genomic: AGCCAACACAGAAAGCACAGAACCACCACATCGTTGCCTTCCTCTAAACGgtgcgtcgtt ... ttctgtacagATAAATTTTTGGGATTCTGAAACTAGTGATACATTTTCTTGCATGAAGGCA
EST: gi|213594381|gb|DB970003.1|DB970003
EST:     AGCCAACACAGAAAGCACAGAACCACCACATCGTTGCCTTCCTCTAAACG                         ATAAATTTTTGGGATTCTGAAACTAGTGATACATTTTCTTGCATGAAGGCA
genomic: AGCCAACACAGAAAGCACAGAACCACCACATCGTTGCCTTCCTCTAAACGgtgcgtcgtt ... ttctgtacagATAAATTTTTGGGATTCTGAAACTAGTGATACATTTTCTTGCATGAAGGCA
EST: gi|151413064|gb|EV282872.1|EV282872
EST:     AGCCAACACAGAAAGCACAGAACCACCACATCGTTGCCTTCCTCTAAACG                         ATAAATTTTTGGGATTCTGAAACTAGTGATACATTTTCTTGCATGAAGGCA
genomic: AGCCAACACAGAAAGCACAGAACCACCACATCGTTGCCTTCCTCTAAACGgtgcgtcgtt ... ttctgtacagATAAATTTTTGGGATTCTGAAACTAGTGATACATTTTCTTGCATGAAGGCA