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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTACAACAAGGCCCTCGAGCAGCTCCAAGACGCCATCGCCAAGAAAGATTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgttcgattccctttttctttttcttttttcgattttgtttcttttttttaaaggtttattagatgataaattacggcggctgaaaattgatcgattcgtg...

Basic information

species Glycine max
transcript GLYMA06G14960.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G14960.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os05g25850.1 (Oryza sativa), 5'ss of exon 1
AACTACAACAAGGCCCTCGAGCAGCTCCAAGACGCCATCGCCAAGAAAGATTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgt----tcgattccc-tttttctttttcttttttcgattttgtttcttttttttaaaggtttattagatgataaattacggcggctgaaaattgatcgattcgtg
||||||||||||||||||||||||||| | | |||| ||||||||   ||  || ||||| ||||  | |||||| ||||||||||||||||||||||||||     | | ||||      |||   | ||  |||  |  |  | | ||| ||     ||  |       |  ||  |||  | ||      |   |       
AACTACAACAAGGCCCTCGAGCAGCTCGACGCCGCCGTCGCCAAGGGCGACGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAGgtgaggccaagtcccgccccccttaccccttcctcgcatacggctttctttctttctttttcttcgtcctgttcatcgcgggcgatgcgggcggcggggg-----

upper sequence: GLYMA06G14960.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G124455_T02 (Zea mays), 5'ss of exon 1
AACTACAACAAGGCCCTCGAGCAGCTCCAAGACGCCATCGCCAAGAAAGATTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgt---tcgattccctttttctttttcttttttcgattttgtttcttttttttaaag-gtttattagatgataaattacggcggctgaaaattgatcgattcgtg
|||||||||||||| || ||||||||| | |  ||| ||||||||   ||  ||||||| |||||  ||||||||||||||||||||||||||||||| |||   |     |||| |          |||   |  || | |        |||  | | || |        |  |   |    ||||         | ||    
AACTACAACAAGGCGCTGGAGCAGCTCGACGCTGCCGTCGCCAAGGGCGACGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacggccctgtgcggggcgaatttgatgggttcgatgggggggcttagtgcgcttttctccccccatctcgtgtgatctgagtgcgagagggtt----

upper sequence: GLYMA06G14960.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G059991_T01 (Zea mays), 5'ss of exon 1
AACTACAACAAGGCCCTCGAGCAGCTCCAAGACGCCATCGCCAAGAAAGATTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgttcgattccctttttctttttcttttttcgattttgtttcttttttttaaaggtttattagatgataaattacggcggctgaaaattgatcgattcgtg------
|||||||||||||| || ||||||||  |    ||| || |||||   ||  ||||||| |||||  |||| |||||||||||||||||||||||||| |||  || || ||    | | | ||   | |   | | |  | || ||    |   |  ||   |  | | ||  || |  |   |  ||| ||   ||        
AACTACAACAAGGCGCTGGAGCAGCTTGACACTGCCGTCTCCAAGGGCGACGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgt--gagtcactgc--cctgtactcgctccacatctatccccttcttgggtaccgtgcttt--ttcttattttgggggattattatctgagcggggcgaattttat

upper sequence: GLYMA06G14960.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv13s0067g02990.t01 (Vitis vinifera), 5'ss of exon 1
AACTACAACAAGGCCCTCGAGCAGCTCCAAGACGCCATCGCCAAGAAAGATTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgttcgattccctttttctttttcttttttcgattttgtttcttttttttaaaggtttattagatg-ataaattacggcggctgaaaattgatcgattcgtg
||||||||||| ||||| ||||||||||| || ||||| |  |||   ||||| ||  | || || ||| | |||||||||||||||||||||||||||||||  |||| ||| || | | |||  |||   ||   |||  | |||| |  ||| |  |   |  || || |   | ||  |  |||   | |  |  | 
AACTACAACAAAGCCCTAGAGCAGCTCCATGAAGCCATGGAAAAGGGCGATTCATCTACGGTTGTCAAGTTGCAGGGCGCCATCAAGTTCAACGGCGGAGgtttaattctcttgtt-tctctctagttttagttcgattttctgttttaatcggtgtggtgtttttatcaaattttgtggtggtgaatatttgggatttta

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17022337|gb|BM093371.1|BM093371
EST:     TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAG                         GTCATGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgttcgattcc ... tttattgcagGTCATGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
EST: gi|16348832|gb|BI974427.1|BI974427
EST:     TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAG                         GTCATGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgttcgattcc ... tttattgcagGTCATGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
EST: gi|7926084|gb|AW832110.1|AW832110
EST:     TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAG                         GTCATGTCAACCATTCTATTTTCTGGAAAAA
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgttcgattcc ... tttattgcagGTCATGTCAACCATTCTATTTTCTGGAAAAA
EST: gi|19935063|gb|BQ080093.1|BQ080093
EST:     TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAG                         GTCATGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgttcgattcc ... tttattgcagGTCATGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
EST: gi|213597364|gb|DB962098.1|DB962098
EST:     TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAG                         GTCATGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgttcgattcc ... tttattgcagGTCATGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
EST: gi|6719532|gb|AW307179.1|AW307179
EST:     TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAG                         GTCATGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgttcgattcc ... tttattgcagGTCATGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
EST: gi|298189799|gb|HO038202.1|HO038202
EST:     TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAG                         GTCATGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgttcgattcc ... tttattgcagGTCATGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
EST: gi|254320556|gb|GR827005.1|GR827005
EST:     TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAG                         GTCATGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgttcgattcc ... tttattgcagGTCATGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
EST: gi|16346801|gb|BI972396.1|BI972396
EST:     TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAG                         GTCATGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgttcgattcc ... tttattgcagGTCATGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
EST: gi|213614908|gb|DB957002.1|DB957002
EST:     TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAG                         GTCATGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgttcgattcc ... tttattgcagGTCATGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
EST: gi|12774096|gb|BG239023.1|BG239023
EST:     TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAG                         GTCATGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgttcgattcc ... tttattgcagGTCATGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
EST: gi|14999950|gb|BI320764.1|BI320764
EST:     TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAG                         GTCATGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgttcgattcc ... tttattgcagGTCATGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
EST: gi|213596825|gb|DB964088.1|DB964088
EST:     TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAG                         GTCATGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGTGAAG
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgttcgattcc ... tttattgcagGTCATGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGTGAAG
EST: gi|58021102|gb|CX707844.1|CX707844
EST:     TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAG                         GTCATGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgttcgattcc ... tttattgcagGTCATGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
EST: gi|151397983|gb|EV267856.1|EV267856
EST:     TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAG                         GTCATGTCAGCCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgttcgattcc ... tttattgcagGTCATGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
EST: gi|15589944|gb|BI674560.1|BI674560
EST:     TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAG                         GTCATGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgttcgattcc ... tttattgcagGTCATGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
EST: gi|16278828|gb|BI943116.1|BI943116
EST:     TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAG                         GTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgttcgattcc ... tttattgcagGTCATGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
EST: gi|16278070|gb|BI942710.1|BI942710
EST:     ATCAAGTTCAACGGCGGAG                         GTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
genomic: ATCAAGTTCAACGGCGGAGgttcgattcc ... tttattgcagGTCATGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
EST: gi|23728745|gb|BU762433.1|BU762433
EST:     TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAG                         GTCATGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgttcgattcc ... tttattgcagGTCATGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
EST: gi|23734076|gb|BU765256.1|BU765256
EST:     ATCAAGTTCAACGGCGGAG                         GTCATGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
genomic: ATCAAGTTCAACGGCGGAGgttcgattcc ... tttattgcagGTCATGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
EST: gi|15000638|gb|BI321452.1|BI321452
EST:     TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAG                         GTCATGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgttcgattcc ... tttattgcagGTCATGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
EST: gi|209718432|gb|BW666244.1|BW666244
EST:     TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAG                         GTCATGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgttcgattcc ... tttattgcagGTCATGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
EST: gi|14258764|gb|BG881672.1|BG881672
EST:     TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAG                         GTCATGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgttcgattcc ... tttattgcagGTCATGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
EST: gi|58017804|gb|CX704546.1|CX704546
EST:     TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAG                         GTCATGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgttcgattcc ... tttattgcagGTCATGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
EST: gi|19346087|gb|BM890967.1|BM890967
EST:     TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAG                         GTCATGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgttcgattcc ... tttattgcagGTCATGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT