1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTTTGACGCAGTCCTTGCCATTCACTGCCCGCACACCTTCGATCCCCTCTCATTTCTCCTCCGTCCGTTACCTCCGCACCGGTCGCGATCCCAGCTCAAGgttacttttaggtttcgcagccaacaaattacgattcctttttttttttttgaattggtttttgagagtttttgttgtcgagtag
species | Glycine max |
transcript | GLYMA06G14340.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CATTTCTCCTCCGTCCGTTACCTCCGCACCGGTCGCGATCCCAGCTCAAG AACATATGAGATTATTCCGCCGGTGAATTGGGGGATTCGGATTGTGCCGGAEST: gi|298192577|gb|HO036659.1|HO036659
genomic: CATTTCTCCTCCGTCCGTTACCTCCGCACCGGTCGCGATCCCAGCTCAAGgttactttta ... tgtcgagtagAACATATGAGATTATTCCGCCGGTGAATTGGGGGATTCGGATTGTGCCGGA
EST: CATTTCTCCTCCGTCCGTTACCTCCGCACCGGTCGCGATCCCAGCTCAAG AACATATGAGATTATTCCGCTGGTGAATTGGGGGATTCGGATTGTGCCGGAEST: gi|192328054|gb|FK021800.1|FK021800
genomic: CATTTCTCCTCCGTCCGTTACCTCCGCACCGGTCGCGATCCCAGCTCAAGgttactttta ... tgtcgagtagAACATATGAGATTATTCCGCCGGTGAATTGGGGGATTCGGATTGTGCCGGA
EST: CATTTCTCCTCCGTCCGTTACCTCCGCACCGGTCGCGATCCCAGCTCAAG AACATATGAGATTATTCCGCCGGTGAATTGGGGGATTCGGATTGTGCCGGAEST: gi|193305921|gb|FK269598.1|FK269598
genomic: CATTTCTCCTCCGTCCGTTACCTCCGCACCGGTCGCGATCCCAGCTCAAGgttactttta ... tgtcgagtagAACATATGAGATTATTCCGCCGGTGAATTGGGGGATTCGGATTGTGCCGGA
EST: CATTTCTCCTCCGTCCGTTACCTCCGCACCGGTCGCGATCCCAGCTCAAG AACATATGAGATTATTCCGCCGGTGAATTGGGGGATTCGGATTGTGCCGGAEST: gi|208085246|gb|GD881808.1|GD881808
genomic: CATTTCTCCTCCGTCCGTTACCTCCGCACCGGTCGCGATCCCAGCTCAAGgttactttta ... tgtcgagtagAACATATGAGATTATTCCGCCGGTGAATTGGGGGATTCGGATTGTGCCGGA
EST: GCGATCCCAGCTCAAG AACATATGAGATTATTCCGCCGGTGAATTGGGGGATTCGGATTGTGCCGGAEST: gi|11687700|gb|BF595376.1|BF595376
genomic: GCGATCCCAGCTCAAGgttactttta ... tgtcgagtagAACATATGAGATTATTCCGCCGGTGAATTGGGGGATTCGGATTGTGCCGGA
EST: CATTTCTCCTCCGTCCGTTACCTCCGCACCGGTCGCGATCCCAGCTCAAG AACATATGAGATTATTCCGCCGGTGAATTGGGGGATTCGGATTGTGCCGGAEST: gi|209700740|gb|BW670488.1|BW670488
genomic: CATTTCTCCTCCGTCCGTTACCTCCGCACCGGTCGCGATCCCAGCTCAAGgttactttta ... tgtcgagtagAACATATGAGATTATTCCGCCGGTGAATTGGGGGATTCGGATTGTGCCGGA
EST: CATTTCTCCTCCGTCCGTTACCTCCGCACCGGTCGCGATCCCAGCTCAAG AACATATGAGATTATTCCGCCGGTGAATTGGGGGATTCGGATTGTGCCGGAEST: gi|208029931|gb|GD827003.1|GD827003
genomic: CATTTCTCCTCCGTCCGTTACCTCCGCACCGGTCGCGATCCCAGCTCAAGgttactttta ... tgtcgagtagAACATATGAGATTATTCCGCCGGTGAATTGGGGGATTCGGATTGTGCCGGA
EST: CATTTCTCCTCCGTCCGTTACCTCCGCACCGGTCGCGATCCCAGCTCAAG AACATATGAGATTATTCCGCCGGTGAATTGGGGGATTCGGATTGTGCCGGA
genomic: CATTTCTCCTCCGTCCGTTACCTCCGCACCGGTCGCGATCCCAGCTCAAGgttactttta ... tgtcgagtagAACATATGAGATTATTCCGCCGGTGAATTGGGGGATTCGGATTGTGCCGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTGACGCAGTCCTTGCCATTCACTGCCCGCACACCTTCGATCCCCTCTCATTTCTCCTCCGTCCGTTACCTCCGCACCGGTCGCGATCCCAGCTCAAGgttacttttaggtttcgcagccaacaaattacgattcctttttttttttttgaattggtttttgagagtttttgttgtcgagtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA