1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CTCTCTCTCTCTCTCCAATTTCCCTGTCACAAACACAGATTCACTTCGAAACTGAACGCTGCAGCAGAAGATGTTCAAAAAgtacgctcactcgctctacaaaatatatctgcaaaattacactccgtagtttctgatgtcattcaacacttgtttctattctttttctcgttctagtttc...
species | Glycine max |
transcript | GLYMA06G13720.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCAGCAGAAAATGTTC-AAAA ATTTTCTGGCGAAGATGTGTCTGCACAGAACCAAGTGAAGGCATCTGTTCAEST: gi|298187707|gb|HO031664.1|HO031664
genomic: GCAGCAGAAGATGTTCAAAAAgtacgctcac ... ttatttccagATTTTCTGGCGAAGATGTGTCTGCACAGAACCAAGTGAAGGCATCTGTTCA
EST: GAACGCTGCAGCAGAAGATGTTCAAAAA ATTTTCTGGCGAAGATGTGTCTGCACAGAACCAAGTGAAGGCATCTGTTCAEST: gi|298164604|gb|HO014249.1|HO014249
genomic: GAACGCTGCAGCAGAAGATGTTCAAAAAgtacgctcac ... ttatttccagATTTTCTGGCGAAGATGTGTCTGCACAGAACCAAGTGAAGGCATCTGTTCA
EST: GAACGCTGCAGCAGAAGATGTTCAAAAA ATTTTCTGGCGAAGATGTGTCTGCACAGAACCAAGTGAAGGCATCTGTTCAEST: gi|298192440|gb|HO036522.1|HO036522
genomic: GAACGCTGCAGCAGAAGATGTTCAAAAAgtacgctcac ... ttatttccagATTTTCTGGCGAAGATGTGTCTGCACAGAACCAAGTGAAGGCATCTGTTCA
EST: GCAGCAGAAGATGTTCAAAAA ATTTTCTGGCGAAGATGTGTCTGCACAGAACCAAGTGAAGGCATCTGTTCAEST: gi|151394068|gb|EV263939.1|EV263939
genomic: GCAGCAGAAGATGTTCAAAAAgtacgctcac ... ttatttccagATTTTCTGGCGAAGATGTGTCTGCACAGAACCAAGTGAAGGCATCTGTTCA
EST: AACACAGATTCACTTCGAAACTGAACGCTGCAGCAGAAGATGTTCAAAAA ATTTTCTGGCGAAGATGTGTCTGCACAGAACCAAGTGAAGGCATCTGTTCAEST: gi|298169962|gb|HO018586.1|HO018586
genomic: AACACAGATTCACTTCGAAACTGAACGCTGCAGCAGAAGATGTTCAAAAAgtacgctcac ... ttatttccagATTTTCTGGCGAAGATGTGTCTGCACAGAACCAAGTGAAGGCATCTGTTCA
EST: ACAGATTCACTTCGAAACTGAACGCTGCAGCAGAAGATGTTCAAAAA ATTTTCTGGCGAAGATGTGTCTGCACAGAACCAAGTGAAGGCATCTGTTCAEST: gi|193399249|gb|FK364751.1|FK364751
genomic: ACAGATTCACTTCGAAACTGAACGCTGCAGCAGAAGATGTTCAAAAAgtacgctcac ... ttatttccagATTTTCTGGCGAAGATGTGTCTGCACAGAACCAAGTGAAGGCATCTGTTCA
EST: GAAACTGAACGCTGCAGCAGAAGATGTTCAAAAA ATTTTCTGGCGAAGATGTGTCTGCACAGAACCAAGTGAAGGCATCTGTTCAEST: gi|209712614|gb|BW653747.1|BW653747
genomic: GAAACTGAACGCTGCAGCAGAAGATGTTCAAAAAgtacgctcac ... ttatttccagATTTTCTGGCGAAGATGTGTCTGCACAGAACCAAGTGAAGGCATCTGTTCA
EST: GAAACTGAACGCTGCAGCAGAAGATGTTCAAAAA ATTTTCTGGCGAAGATGTGTCTGCACAGAACCAAGTGAAGGCATCTGTTCAEST: gi|9899350|gb|BE608318.1|BE608318
genomic: GAAACTGAACGCTGCAGCAGAAGATGTTCAAAAAgtacgctcac ... ttatttccagATTTTCTGGCGAAGATGTGTCTGCACAGAACCAAGTGAAGGCATCTGTTCA
EST: AACACAGATTCACTTCGAAACTGAACGCTGCAGCAGAAGATGTTCAAAAA ATTTTCTGGCGAAGATGTGTCTGCACAGAACCAAGTGAAGGCATCTGTTCAEST: gi|193412006|gb|FK380401.1|FK380401
genomic: AACACAGATTCACTTCGAAACTGAACGCTGCAGCAGAAGATGTTCAAAAAgtacgctcac ... ttatttccagATTTTCTGGCGAAGATGTGTCTGCACAGAACCAAGTGAAGGCATCTGTTCA
EST: GAAACTGAACGCTGCAGCAGAAGATGTTC-AAAA ATTTTCTGGCGAAGATGTGTCTGCACAGAACCAAGTGAAGGCATCTGTTCAEST: gi|151412868|gb|EV282680.1|EV282680
genomic: GAAACTGAACGCTGCAGCAGAAGATGTTCAAAAAgtacgctcac ... ttatttccagATTTTCTGGCGAAGATGTGTCTGCACAGAACCAAGTGAAGGCATCTGTTCA
EST: AACACAGATTCACTTCGAAACCGAACGCCGCAGCAGAAGATGTTCAAAAA ATTTTCTGGCGAAGATGTGTCTGCACAGAACCAAGTGAAGGCATCTGTTCAEST: gi|193700872|gb|FK639939.1|FK639939
genomic: AACACAGATTCACTTCGAAACTGAACGCTGCAGCAGAAGATGTTCAAAAAgtacgctcac ... ttatttccagATTTTCTGGCGAAGATGTGTCTGCACAGAACCAAGTGAAGGCATCTGTTCA
EST: GCAGCAGAAGATGTTCAAAAA ATTTTCTGGCGAAGATGTGTCTGCACAGAACCAAGTGAAGGCATCTGTTCAEST: gi|192300163|gb|FG989285.1|FG989285
genomic: GCAGCAGAAGATGTTCAAAAAgtacgctcac ... ttatttccagATTTTCTGGCGAAGATGTGTCTGCACAGAACCAAGTGAAGGCATCTGTTCA
EST: AACACAGATTCACTTCGAAACTGAACGCTGCAGCAGAAGATGTTCAAAAA ATTTTCTGGCGAAGATGTGTCTGCACAGAACCAAGTGAAGGCATCTGTTCAEST: gi|208277879|gb|GE074886.1|GE074886
genomic: AACACAGATTCACTTCGAAACTGAACGCTGCAGCAGAAGATGTTCAAAAAgtacgctcac ... ttatttccagATTTTCTGGCGAAGATGTGTCTGCACAGAACCAAGTGAAGGCATCTGTTCA
EST: AAGATGTTACTAAAAA ATTTTCTGGCGAAGATGTGTCTGCACAGAACCAAGTGAAGGCATCTGTTC
genomic: AAGATGTT-C-AAAAAgtacgctcac ... ttatttccagATTTTCTGGCGAAGATGTGTCTGCACAGAACCAAGTGAAGGCATCTGTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCTCTCTCTCTCTCCAATTTCCCTGTCACAAACACAGATTCACTTCGAAACTGAACGCTGCAGCAGAAGATGTTCAAAAAgtacgctcactcgctctacaaaatatatctgcaaaattacactccgtagtttctgatgtcattcaacacttgtttctattctttttctcgttctagtttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG