1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AGAAGTGCATAGCGTGATAGAGTTTTTTGTTGTCTATACATCTTCCTTCGTTGTTTGGGTTCGTTCGCCTTCACTCTCCGACATTCATATCATTCATCAGgcaagcaacgccccttctctttcatccccatttcttcttccttctactgtttcttttctccactttatgtttttttcgccttttattcttctattcgttt...
species | Glycine max |
transcript | GLYMA06G13210.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTGTTTGGGTTCGTTCGCCTTCACTCTCCGACATTCATATCA-T--TC-- -AT-CAGAGACTGGAGCCTGAGAAGAAAAGGAGAATTTATGGAGGACGGCGEST: gi|207755435|gb|GD726558.1|GD726558
genomic: TTGTTTGGGTTCGTTCGCCTTCACTCTCCGACATTCATATCATTCATCAGgcaagcaacg ... gtgcttatagTATACAGAGACTGGAGCCTGAGAAGAAAAGGAGAATTTATGGAGGACGGCG
EST: TTCGTTCGCCTTCACTCTCCGACATTCATATCATTCATCAG TATACAGAGACTGGAGCCTGAGAAGAAAAGGAGAATTTATGGAGGACGGCGEST: gi|192325742|gb|FK015099.1|FK015099
genomic: TTCGTTCGCCTTCACTCTCCGACATTCATATCATTCATCAGgcaagcaacg ... gtgcttatagTATACAGAGACTGGAGCCTGAGAAGAAAAGGAGAATTTATGGAGGACGGCG
EST: TTGTTTGGGTTCGTTCGCCTTCACTCTCCGACATTCATATCA-T--TC-- -AT-CAGAGACTGGAGCCTGAGAAGAAAAGGAGAATTTATGGAGGACGGCG
genomic: TTGTTTGGGTTCGTTCGCCTTCACTCTCCGACATTCATATCATTCATCAGgcaagcaacg ... gtgcttatagTATACAGAGACTGGAGCCTGAGAAGAAAAGGAGAATTTATGGAGGACGGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAAGTGCATAGCGTGATAGAGTTTTTTGTTGTCTATACATCTTCCTTCGTTGTTTGGGTTCGTTCGCCTTCACTCTCCGACATTCATATCATTCATCAGgcaagcaacgccccttctctttcatccccatttcttcttccttctactgtttcttttctccactttatgtttttttcgccttttattcttctattcgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catcccc