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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGCTTCTGCAGATTAGCTGGAAGAAATAAAGAAAGAAAAAGATAACAAAAGTTGTTCAAAGGCCATGGATGTTGCACATTTTTTGTTTGGAATCTTTGgtaggtttaagaccctttcagttttacatgtgtttctctcacttttttttttctctatatccttgacttctgaacttgtggttcctcttctttgttggtacag

Basic information

species Glycine max
transcript GLYMA06G12740.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298197426|gb|HO044905.1|HO044905
EST:     AAGTTGTTCAAAGGCCATGGATGTTGCACATTTTTTGTTTGGAATCTTTG                         GGAATGCTTCCGCTCTGTTCCTCTTCTTGGCTCCAGT
genomic: AAGTTGTTCAAAGGCCATGGATGTTGCACATTTTTTGTTTGGAATCTTTGgtaggtttaa ... gttggtacagGGAATGCTTCCGCTCTGTTCCTCTTCTTGGCTCCAGT
EST: gi|298190375|gb|HO032496.1|HO032496
EST:     AAGTTGTTCAAAGGCCATGGATGTTGCACATTTTTTGTTTGGAATCTTTG                         GGAATGCTTCCGCTCTGTTCCTCTTCTTGGCTCCAGT
genomic: AAGTTGTTCAAAGGCCATGGATGTTGCACATTTTTTGTTTGGAATCTTTGgtaggtttaa ... gttggtacagGGAATGCTTCCGCTCTGTTCCTCTTCTTGGCTCCAGT
EST: gi|298168790|gb|HO009720.1|HO009720
EST:     AAGTTGTTCAAAGGCCATGGATGTTGCACATTTTTTGTTTGGAATCTTTG                         GGAATGCTTCCGCTCTGTTCCTCTTCTTGGCTCCAGT
genomic: AAGTTGTTCAAAGGCCATGGATGTTGCACATTTTTTGTTTGGAATCTTTGgtaggtttaa ... gttggtacagGGAATGCTTCCGCTCTGTTCCTCTTCTTGGCTCCAGT
EST: gi|298165929|gb|HO008900.1|HO008900
EST:     GCACATTTTTTGTTTGGAATCTTTG                         GGAATGCTTCCGCTCTGTTCCTCTTCTTGGCTCCAGT
genomic: GCACATTTTTTGTTTGGAATCTTTGgtaggtttaa ... gttggtacagGGAATGCTTCCGCTCTGTTCCTCTTCTTGGCTCCAGT
EST: gi|298171821|gb|HO021413.1|HO021413
EST:     AAGTTGTTCAAAGGCCATGGATGTTGCACATTTTTTGTTTGGAATCTTTG                         GGAATGCTTCCGCTCTGTTCCTCTTCTTGGCTCCAGT
genomic: AAGTTGTTCAAAGGCCATGGATGTTGCACATTTTTTGTTTGGAATCTTTGgtaggtttaa ... gttggtacagGGAATGCTTCCGCTCTGTTCCTCTTCTTGGCTCCAGT
EST: gi|192326194|gb|FK016986.1|FK016986
EST:     AAGTTGTTCAAAGGCCATGGATGTTGCACATTTTTTGTTTGGAATCTTTG                         GGAATGCTTCCGCTCTGTTCCTCTTCTTGGCTCCAGT
genomic: AAGTTGTTCAAAGGCCATGGATGTTGCACATTTTTTGTTTGGAATCTTTGgtaggtttaa ... gttggtacagGGAATGCTTCCGCTCTGTTCCTCTTCTTGGCTCCAGT
EST: gi|298191089|gb|HO038568.1|HO038568
EST:     AAGTTGTTCAAAGGCCATGGATGTTGCACATTTTTTGTTTGGAATCTTTG                         GGAATGCTTCCGCTCTGTTCCTCTTCTTGGCTCCAGT
genomic: AAGTTGTTCAAAGGCCATGGATGTTGCACATTTTTTGTTTGGAATCTTTGgtaggtttaa ... gttggtacagGGAATGCTTCCGCTCTGTTCCTCTTCTTGGCTCCAGT
EST: gi|151413261|gb|EV283069.1|EV283069
EST:     AAGTTGTTCAAAGGCCATGGATGTTGCACATTTTTTGTTTGGAATCTTTG                         GGAATGCTTCCGCTCTGTTCCTCTTCTTGGCTCCAGT
genomic: AAGTTGTTCAAAGGCCATGGATGTTGCACATTTTTTGTTTGGAATCTTTGgtaggtttaa ... gttggtacagGGAATGCTTCCGCTCTGTTCCTCTTCTTGGCTCCAGT
EST: gi|298175722|gb|HO018319.1|HO018319
EST:     AAGTTGTTCAAAGGCCATGGATGTTGCACATTTTTTGTTTGGAATCTTTG                         GGAATGCTTCCGCTCTGTTCCTCTTCTTGGCTCCAGT
genomic: AAGTTGTTCAAAGGCCATGGATGTTGCACATTTTTTGTTTGGAATCTTTGgtaggtttaa ... gttggtacagGGAATGCTTCCGCTCTGTTCCTCTTCTTGGCTCCAGT
EST: gi|209700762|gb|BW683045.1|BW683045
EST:     AAGTTGTTCAAAGGCCATGGATGTTGCACATTTTTTGTTTGGAATCTTTG                         GGAATGCTTCCGCTCTGTTCCTCTTCTTGGCTCCAGT
genomic: AAGTTGTTCAAAGGCCATGGATGTTGCACATTTTTTGTTTGGAATCTTTGgtaggtttaa ... gttggtacagGGAATGCTTCCGCTCTGTTCCTCTTCTTGGCTCCAGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCAGCTTCTGCAGATTAGCTGGAAGAAATAAAGAAAGAAAAAGATAACAAAAGTTGTTCAAAGGCCATGGATGTTGCACATTTTTTGTTTGGAATCTTTGgtaggtttaagaccctttcagttttacatgtgtttctctcacttttttttttctctatatccttgacttctgaacttgtggttcctcttctttgttggtacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA