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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCAACGAGGACGAGTTCCACAAGATTTGCCTGGTCGATTGCGACTTCTTCATTCGCAAGCCCCCTGACCCCGACAACGATGTCTACGACTTCAGAGAGgttctacacttcgattctacctcttcttcttcttttttgttgttgttcaacttttcaccgttgagttgaatctttgttcgtag

Basic information

species Glycine max
transcript GLYMA06G12370.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G12370.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os11g01890.1 (Oryza sativa), 5'ss of exon 1
AATCAACGAGGACGAGTTCCACAAGATTTGCCTGGTCGATTGCGACTTCTTCATTCGCAAGCCCCCTGACCCCGACAACGATGTCTACGACTTCAGAGAGgttctacacttcgattctacctcttcttct----tcttttttgttg-ttgttcaacttttcac-cgttgagttga-atctttgttcgtag----------------------------------------------------------------------------------------------------------
  ||||||||||||| |||||||||||| ||||  |  | |||||||| || || ||||||   |||||||||||| |||| |||| ||||||| | |||||      | ||  || |   |||    ||      || |||| |  |||      || |||  | |  | |||| |    | |  ||                                                                                                            
CGTCAACGAGGACGAATTCCACAAGATTCGCCTACTGCACTGCGACTTTTTTATCCGCAAGGTGCCTGACCCCGACGACGACGTCTTCGACTTCCGGGAGgtatacatcctcatttatctgtctaacactagtacattctttgctaattgcctgtgttatcaagcatgtatttgacaatgctatctgttaatgcaacatctcatgacacattcattgcagtgctatccaaattgacagaactcaatcttttaggttgattgaactaaatcatgtgttccttcataatgtgcaacag

upper sequence: GLYMA06G12370.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM5G829928_T02 (Zea mays), 5'ss of exon 1
AATCAACGAGGACGAGTTCCACAAGATTTGCCTGGTCGATTGCGACTTCTTCATTCGCAAGCCCCCTGACCCCGACAACGATGTCTACGACTTCAGAGAGgttctacacttcgattctacc-tcttcttcttcttttttgttgttgttcaacttttcaccgttgagttgaatctttgttcgtag-----------------
  |  | ||||||||||| ||||||||| | ||| || | ||||||||| | || ||||||   || ||||||||| |||| |||| |||||||||||||||  ||     | ||   ||   |||||  ||  |   |  |   | | | |||   |        |   |    ||   |  |                 
CGTGGATGAGGACGAGTTTCACAAGATTAGGCTGCTCCACTGCGACTTCCTTATCCGCAAGGTGCCCGACCCCGACGACGACGTCTTCGACTTCAGAGAGgta-tatgtagccataagacaaccttctcattagtcagtactaccgctgagcttcctagtacaatttgtgacaactgcctgcggtatttcaatctcaccaa

upper sequence: GLYMA06G12370.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv18s0001g01770.t01 (Vitis vinifera), 5'ss of exon 1
AATCAACGAGGACGAGTTCCACAAGATTTGCCTGGTCGATTGCGACTTCTTCATTCGCAAGCCCCCTGACCCCGACAACGATGTCTACGACTTCAGAGAGgttctacacttcgattctacctcttcttcttctt----ttttgttgttgttcaa------cttttcaccgttgagttgaatctttgttcgtag------
 ||||||||||||||||| ||||| ||| || || | |||||||| ||||||||| | ||||| ||||| || || |||||||||||||||||||||||||||      |  |||| |  |  || ||    |     || || | ||| | ||        |||    |||   |||  | ||  ||  | |      
GATCAACGAGGACGAGTTTCACAAAATTAGCTTGTTTGATTGCGATTTCTTCATTAGGAAGCCGCCTGATCCGGATAACGATGTCTACGACTTCAGAGAGgttagtttttctgattttctcgtttttttagatgagaattgtgctattgatgaaagggaatattttggggtttctttgttttttattttttggttgtag