1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AACTCATTCCCCTTTTTTCCGTCGTTCTTCTCAATTTGTCTGAGAAATTCGTGAAGGAACCTCACTCTGTTGCTGCATTCCCCCATGGCTTCTGCTTCAGgtacaggtcaatttcactccgcactttcgctttcttcttcttcgactctctagatagattttgaatttgatttggacatatctcttcccacacgattaat...
species | Glycine max |
transcript | GLYMA06G12130.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTGAAGGAACCTCACTCTGTTGCTGCATTCCCCCATGGCTTCTGCTTCAG ATTTTGCGTTAGCGGTTTCTTCTGAACTCGAGTCAGTTTTGAGGCTGEST: gi|298191428|gb|HO038907.1|HO038907
genomic: GTGAAGGAACCTCACTCTGTTGCTGCATTCCCCCATGGCTTCTGCTTCAGgtacaggtca ... tcttttacagATTTTGCGTTAGCGGTTTCTTCTGAACTCGAGTCAGTTTTGAGGCTG
EST: GTGAAGGAACCTCACTCTGTTGCTGCATTCCCCCATGGCTTCTGCTTCAG ATTTTGCGTTAGCGGTTTCTTCTGAACTCGAGTCAGTTTTGAGGCTGAAGAEST: gi|6455802|gb|AW186477.1|AW186477
genomic: GTGAAGGAACCTCACTCTGTTGCTGCATTCCCCCATGGCTTCTGCTTCAGgtacaggtca ... tcttttacagATTTTGCGTTAGCGGTTTCTTCTGAACTCGAGTCAGTTTTGAGGCTGAAGA
EST: GTGAAGGAACCTCACTCTGTTGCTGCATTCCCCCATGGCTTCTGCTTCAG ATTTTGCGTTAGCGGTTTCTTCTGAACTCGAGTCAGTTTTGAGGCTGAAGAEST: gi|9565579|gb|BE475088.1|BE475088
genomic: GTGAAGGAACCTCACTCTGTTGCTGCATTCCCCCATGGCTTCTGCTTCAGgtacaggtca ... tcttttacagATTTTGCGTTAGCGGTTTCTTCTGAACTCGAGTCAGTTTTGAGGCTGAAGA
EST: GCATTCCCCCATGGCTTCTGCTTCAG ATTTTGCGTTAGCGGTTTCTTCTGAACTCGAGTCAGTTTTGAGGCTGAAGAEST: gi|298197496|gb|HO044975.1|HO044975
genomic: GCATTCCCCCATGGCTTCTGCTTCAGgtacaggtca ... tcttttacagATTTTGCGTTAGCGGTTTCTTCTGAACTCGAGTCAGTTTTGAGGCTGAAGA
EST: GTGAAGGAACCTCACTCTGTTGCTGCATTCCCCCATGGCTTCTGCTTCAG ATTTTGCGTTAGCGGTTTCTTCTGAACTCGAGTCAGTTTTGAGGCTGAAGAEST: gi|9987749|gb|BE661857.1|BE661857
genomic: GTGAAGGAACCTCACTCTGTTGCTGCATTCCCCCATGGCTTCTGCTTCAGgtacaggtca ... tcttttacagATTTTGCGTTAGCGGTTTCTTCTGAACTCGAGTCAGTTTTGAGGCTGAAGA
EST: CTCACTCTGTTGCTGCATTCCCCCATGGCTTCTGCTTCAG ATTTTGCGTTAGCGGTTTCTTCTGAACTCGAGTCAGTTTTGAGGCTGAAGAEST: gi|151396262|gb|EV266139.1|EV266139
genomic: CTCACTCTGTTGCTGCATTCCCCCATGGCTTCTGCTTCAGgtacaggtca ... tcttttacagATTTTGCGTTAGCGGTTTCTTCTGAACTCGAGTCAGTTTTGAGGCTGAAGA
EST: GTGAAGGAACCTCACTCTGTTGCTGCATTCCCCCATGGCTTCTGCTTCAG ATTTTGCGTTAGCGGTTTCTTCTGAACTCGAGTCAGTTTTGAGGCTGAAGAEST: gi|151409014|gb|EV278822.1|EV278822
genomic: GTGAAGGAACCTCACTCTGTTGCTGCATTCCCCCATGGCTTCTGCTTCAGgtacaggtca ... tcttttacagATTTTGCGTTAGCGGTTTCTTCTGAACTCGAGTCAGTTTTGAGGCTGAAGA
EST: GTGAAGGAACCTCACTCTGTTGCTGCATTCCCCCATGGCTTCTGCTTCAG ATTTTGCGTTAGCGGTTTCTTCTGAACTCGAGTCAGTTTTGAGGCTGAAGAEST: gi|26059085|gb|CA801999.1|CA801999
genomic: GTGAAGGAACCTCACTCTGTTGCTGCATTCCCCCATGGCTTCTGCTTCAGgtacaggtca ... tcttttacagATTTTGCGTTAGCGGTTTCTTCTGAACTCGAGTCAGTTTTGAGGCTGAAGA
EST: GTGAAGGAACCTCACTCTGTTGCTGCATTCCCCCATGGCTTCTGCTTCAG ATTTTGCGTTAGCGGTTTCTTCTGAACTCGAGTCAGTTTTGAGGCTGAAGAEST: gi|151394446|gb|EV264317.1|EV264317
genomic: GTGAAGGAACCTCACTCTGTTGCTGCATTCCCCCATGGCTTCTGCTTCAGgtacaggtca ... tcttttacagATTTTGCGTTAGCGGTTTCTTCTGAACTCGAGTCAGTTTTGAGGCTGAAGA
EST: GTGAAGGAACCTCACTCTGTTGCTGCATTCCCCCATGGCTTCTGCTTCAG ATTTTGCGTTAGCGGTTTCTTCTGAACTCGAGTCAGTTTTGAGGCTGAAGA
genomic: GTGAAGGAACCTCACTCTGTTGCTGCATTCCCCCATGGCTTCTGCTTCAGgtacaggtca ... tcttttacagATTTTGCGTTAGCGGTTTCTTCTGAACTCGAGTCAGTTTTGAGGCTGAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACTCATTCCCCTTTTTTCCGTCGTTCTTCTCAATTTGTCTGAGAAATTCGTGAAGGAACCTCACTCTGTTGCTGCATTCCCCCATGGCTTCTGCTTCAGgtacaggtcaatttcactccgcactttcgctttcttcttcttcgactctctagatagattttgaatttgatttggacatatctcttcccacacgattaat
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcttcc