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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTTGCACTATCTCTGCCGCAAATGCGCGTCGCAGCCAATCGCCGTTCCCATCATCGCCGAAATCGACCTCTACAAATACGACCCCTGGGACTTACCCGgtaacataatcattcattcattcattcattcttcgatttctgattcttaatttttatttattaattgttactgtgttactttacag

Basic information

species Glycine max
transcript GLYMA06G11970.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G11970.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g66120.1 (Oryza sativa), 5'ss of exon 1
GTGTTGCACTATCTCTGCCGCAAATGCGCGTCGCAGCCAATCGCCGTTCCCATCATCGCCGAAATCGACCTCTACAAATACGACCCCTGGGACTTACCCGgtaacataatcat--tcattcattcattcattcttcgatttc-tgattcttaatttttatttattaattgttactgtgttactttacag----------
||| ||||||| |||||||||   |||||    |  || |||||||| |||||||||||||| |||||||||||||| | ||| || ||| |  | ||| |||  |||||| |  || | ||| |   || || ||     | | |         |  ||| ||| |||| |   || | | ||    |          
GTGATGCACTACCTCTGCCGCCGCTGCGCCGGCCTCCCCATCGCCGTCCCCATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataatcctcctcctccatcctcccaatcatcaccaccatcaacgccgtcgtgaattgattgattgatttggtttgatttgttggtgttgtgtag

upper sequence: GLYMA06G11970.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os05g34830.1 (Oryza sativa), 5'ss of exon 1
GTGTTGCACTATCTCTGCCGCAAATGCGCGTCGCAGCCAATCGCCGTTCCCATCATCGCCGAAATCGACCTCTACAAATACGACCCCTGGGACTTACCCGgtaacataatcattcattcattcattcattcttcgatttctgattcttaatttttatttattaattgttactgtgttactttacag
||| ||||||| ||||||||    |||||    |  || |||||||| ||||||||||||||  ||||||||||||| | ||| || ||| |  | ||  ||| | |  || | |||    ||  || | | || ||  |  | |  ||  |  | || ||  || ||  |  ||   |  | |||
GTGATGCACTACCTCTGCCGGCGGTGCGCCGGCCTCCCCATCGCCGTCCCCATCATCGCCGAGGTCGACCTCTACAAGTTCGATCCATGGCATCTCCCAAgta-cgtc-tcttccatc---tccctcctccatccatg-caaacttatagctactgttcatcgatcgt--ccatgactccatgcag

upper sequence: GLYMA06G11970.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os05g34830.2 (Oryza sativa), 5'ss of exon 1
-----------------------GTGTTGCACTATCTCTGCCGCAAATGCGCGTCGCAGCCAATCGCCGTTCCCATCATCGCCGAAATCGACCTCTACAAATACGACCCCTGGGACTTACCCGgtaacataatcattcattcattcattcattcttcgatttctgattcttaatttttatttattaattgttactgtgttactttacag
                       ||| ||||||| ||||||||    |||||    |  || |||||||| ||||||||||||||  ||||||||||||| | ||| || ||| |  | ||  ||| | |  || | |||    ||  || | | || ||  |  | |  ||  |  | || ||  || ||  |  ||   |  | |||
TCCACCCGACGGACGAGGAGCTGGTGATGCACTACCTCTGCCGGCGGTGCGCCGGCCTCCCCATCGCCGTCCCCATCATCGCCGAGGTCGACCTCTACAAgttcgatccatggcatctcccaagta-cgtc-tcttccatc---tccctcctccatccatg-caaacttatagctactgttcatcgatcgt--ccatgactccatgcag

upper sequence: GLYMA06G11970.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G014653_T03 (Zea mays), 5'ss of exon 1
GTGTTGCACTATCTCTGCCGCAAATGCGCGTCGCAGCCAATCGCCGTTCCCATCATCGCCGAAATCGACCTCTACAAATACGACCCCTGGGACTTACCCGgta----acataatcattcattcatt--------------cattcattcttcgatttctgat----tcttaatttttatttattaattgttactgtgttactttacag-------
||| ||||||| |||||||||   |||||    | ||| |||||||| |||||||||||||| |||||||||||||| | |||||| ||| |  | ||  |||     | |  || |   |    |              ||  | |    | |||||   |     | | |   |       |||| | |    || ||  |  | |       
GTGATGCACTACCTCTGCCGCCGCTGCGCCGGCCTGCCCATCGCCGTCCCCATCATCGCCGAGATCGACCTCTACAAGTTCGACCCATGGCAGCTCCCAAgtacgtcccgtcgtcctcggtcttcttgcagcagcagtagcagccgtgaaccaatttcctgtgcggccgtgacgatggcgagctaatcgatcgattgctaactctctgtgtgcag

upper sequence: GLYMA06G11970.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G01720.1 (Arabidopsis thaliana), 5'ss of exon 1
GTGTTGCACTATCTCTGCCGCAAATGCGCGTCGCAGCCAATCGCCGTTCCCATCATCGCCGAAATCGACCTCTACAAATACGACCCCTGGGACTTACCCGgtaacataatcattcattcattcattcattctt--cgatttctgattctta-atttttatttattaattgttactgtgttactttacag
||  |||||||||||||||||||||| || || ||| | ||||||||||| |||||||| || ||||| |||||||||||||| || |||||  | || ||| ||||| |   ||  |   || || ||  ||  ||  |||| | ||| | ||| || | |  | | |   | |     | |||||||
GTCATGCACTATCTCTGCCGCAAATGTGCCTCTCAGTCCATCGCCGTTCCGATCATCGCTGAGATCGATCTCTACAAATACGATCCATGGGAGCTTCCTGgtgacatactagctctctttctctttaatctttgccggattctaaatctgagattgttctctgctgactcaaatt---caattttacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58024693|gb|CX711434.1|CX711434
EST:     CATCATCGCCGAAATCGACCTCTACAAATACGTCCCCTGGGACTTACCCG                         GATTGGCTACTTATGGAGAGAAAGAGTGGTACTTCTTTTCACCACGGGACC
genomic: CATCATCGCCGAAATCGACCTCTACAAATACGACCCCTGGGACTTACCCGgtaacataat ... tactttacagGATTGGCTACTTATGGAGAGAAAGAGTGGTACTTCTTTTCACCACGGGACC
EST: gi|298168446|gb|HO009376.1|HO009376
EST:     CATCATCGCCGAAATCGACCTCTACAAATACGACCCCTGGGACTTACCCG                         GATTGGCTACTTATGGAGAGAAAGAGTGGTACTTCTTTTCACCACGGGACC
genomic: CATCATCGCCGAAATCGACCTCTACAAATACGACCCCTGGGACTTACCCGgtaacataat ... tactttacagGATTGGCTACTTATGGAGAGAAAGAGTGGTACTTCTTTTCACCACGGGACC
EST: gi|213605648|gb|DB972296.1|DB972296
EST:     CATCATCGCCGAAATCGACCTCTACAAATACGACCCCTGGGACTTACCCG                         GATTGGCTACTTATGGAGAGAAAGAGTGGTACTTCTTTTCACCACGGGACC
genomic: CATCATCGCCGAAATCGACCTCTACAAATACGACCCCTGGGACTTACCCGgtaacataat ... tactttacagGATTGGCTACTTATGGAGAGAAAGAGTGGTACTTCTTTTCACCACGGGACC
EST: gi|58021107|gb|CX707849.1|CX707849
EST:     CATCATCGCCGAAATCGACCTCTACAAATACGTCCCCTGGGACTTACCCG                         GATTGGCTACTTATGGAGAGAAAGAGTGGTACTTCTTTTCACCACGGGACC
genomic: CATCATCGCCGAAATCGACCTCTACAAATACGACCCCTGGGACTTACCCGgtaacataat ... tactttacagGATTGGCTACTTATGGAGAGAAAGAGTGGTACTTCTTTTCACCACGGGACC
EST: gi|21678264|gb|BQ630615.1|BQ630615
EST:     CATCATCGCCGAAATCGACCTCTACAAATATGACCCCTGGGACTTACCCG                         GATTGGCTACTTATGGAGAGAAAGAGTGGCACTTCTTTTCACCACGGGACC
genomic: CATCATCGCCGAAATCGACCTCTACAAATACGACCCCTGGGACTTACCCGgtaacataat ... tactttacagGATTGGCTACTTATGGAGAGAAAGAGTGGTACTTCTTTTCACCACGGGACC
EST: gi|18734175|gb|BM528031.1|BM528031
EST:     CATCATCGCCGAAATCGACCTCTACAAATACGACCCCTGGGACTTACCCG                         GATTGGCTACTTATGGAGAGAAAGAGTGGTACTTCTTTTCACCACGGGACC
genomic: CATCATCGCCGAAATCGACCTCTACAAATACGACCCCTGGGACTTACCCGgtaacataat ... tactttacagGATTGGCTACTTATGGAGAGAAAGAGTGGTACTTCTTTTCACCACGGGACC
EST: gi|209709358|gb|BW668328.1|BW668328
EST:     CATCATCGCCGAAATCGACCTCTACAAATACGACCCCTGGGACTTACCCG                         GATTGGCTACTTATGGAGAGAAAGAGTGGTACTTCTTTTCACCACGGGACC
genomic: CATCATCGCCGAAATCGACCTCTACAAATACGACCCCTGGGACTTACCCGgtaacataat ... tactttacagGATTGGCTACTTATGGAGAGAAAGAGTGGTACTTCTTTTCACCACGGGACC
EST: gi|254344238|gb|GR851041.1|GR851041
EST:     CATCATCGCCGAAATCGACCTCTACAAATACGACCCCTGGGACTTACCCG                         GATTGGCTACTTATGGAGAGAAAGAGTGGTACTTCTTTTCACCACGGGACC
genomic: CATCATCGCCGAAATCGACCTCTACAAATACGACCCCTGGGACTTACCCGgtaacataat ... tactttacagGATTGGCTACTTATGGAGAGAAAGAGTGGTACTTCTTTTCACCACGGGACC
EST: gi|213592475|gb|DB971631.1|DB971631
EST:     CATCATCGCCGAAATCGACCTCTACAAATACGACCCCTGGGACTTACCCG                         GATTGGCTACTTATGGAGAGAAAGAGTGGTACTTCTTTTCACCACGGGACC
genomic: CATCATCGCCGAAATCGACCTCTACAAATACGACCCCTGGGACTTACCCGgtaacataat ... tactttacagGATTGGCTACTTATGGAGAGAAAGAGTGGTACTTCTTTTCACCACGGGACC
EST: gi|213595443|gb|DB966539.1|DB966539
EST:     CATCATCGCCGAAATCGACCTCTACAAATACGACCCCTGGGACTTACCCG                         GATTGGCTACTTATGGAGAGAAAGAGTGGTACTTCTTTTCACCACGGGACC
genomic: CATCATCGCCGAAATCGACCTCTACAAATACGACCCCTGGGACTTACCCGgtaacataat ... tactttacagGATTGGCTACTTATGGAGAGAAAGAGTGGTACTTCTTTTCACCACGGGACC
EST: gi|209713052|gb|BW653759.1|BW653759
EST:     CATCATCGCCGAAATCAACCTCTACAAATACGACCCCTGGGACTTACCCG                         GATTGGCTACTTATGGAGAGAAAGAGTGGTACTTCTTTTCACCACGGGACC
genomic: CATCATCGCCGAAATCGACCTCTACAAATACGACCCCTGGGACTTACCCGgtaacataat ... tactttacagGATTGGCTACTTATGGAGAGAAAGAGTGGTACTTCTTTTCACCACGGGACC
EST: gi|213592504|gb|DB971646.1|DB971646
EST:     CATCATCGCCGAAATCGACCTCTACAAATACGACCCCTGGGACTTACCCG                         GATTGGCTACTTATGGAGAGAAAGAGTGGTACTTCTTTTCACCACGGGACC
genomic: CATCATCGCCGAAATCGACCTCTACAAATACGACCCCTGGGACTTACCCGgtaacataat ... tactttacagGATTGGCTACTTATGGAGAGAAAGAGTGGTACTTCTTTTCACCACGGGACC
EST: gi|209713140|gb|BW653849.1|BW653849
EST:     CATCATCGCCGAAATCGACCTCTACAAATACGACCCCTGGGACTTACCCG                         GATTGGCTACTTATGGAGAGAAAGAGTGGTACTTCTTTTCACCACGGGACC
genomic: CATCATCGCCGAAATCGACCTCTACAAATACGACCCCTGGGACTTACCCGgtaacataat ... tactttacagGATTGGCTACTTATGGAGAGAAAGAGTGGTACTTCTTTTCACCACGGGACC
EST: gi|209727657|gb|BW663797.1|BW663797
EST:     CATCATCGCCGAAATCGACCTCTACAAATACGACCCCTGGGACTTACCCG                         GATTGGCTACTTATGGAGAGAAAGAGTGGTACTTCTTTTCACCACGGGACC
genomic: CATCATCGCCGAAATCGACCTCTACAAATACGACCCCTGGGACTTACCCGgtaacataat ... tactttacagGATTGGCTACTTATGGAGAGAAAGAGTGGTACTTCTTTTCACCACGGGACC
EST: gi|209727697|gb|BW658434.1|BW658434
EST:     CATCATCGCCGAAATCGACCTCTACAAATACGACCCCTGGGACTTACCCG                         GATTGGCTACTTATGGAGAGAAAGAGTGGTACTTCTTTTCACCACGGGACC
genomic: CATCATCGCCGAAATCGACCTCTACAAATACGACCCCTGGGACTTACCCGgtaacataat ... tactttacagGATTGGCTACTTATGGAGAGAAAGAGTGGTACTTCTTTTCACCACGGGACC
EST: gi|11274975|gb|BF325299.1|BF325299
EST:     CATCATCGCCGAAATCGACCTCTACAAATACGACCCCTGGGACTTACCCG                         GATTGGCTACTTATGGAGAGAAAGAGTGGTACTTCTTTTCACCACGGGACC
genomic: CATCATCGCCGAAATCGACCTCTACAAATACGACCCCTGGGACTTACCCGgtaacataat ... tactttacagGATTGGCTACTTATGGAGAGAAAGAGTGGTACTTCTTTTCACCACGGGACC
EST: gi|11273926|gb|BF324315.1|BF324315
EST:     CCCCTGGGACTTACCCG                         GATTGGCTACTTATGGAGAGAAAGAGTGGTACTTCTTTTCACCACGGGACC
genomic: CCCCTGGGACTTACCCGgtaacataat ... tactttacagGATTGGCTACTTATGGAGAGAAAGAGTGGTACTTCTTTTCACCACGGGACC
EST: gi|23064618|gb|BU579391.1|BU579391
EST:     CATCATCGCCGAAATCGACCTCTACAAATACTACCTCNGGGACTTACCCG                         GATTGGCTACTTATGGAGAGAAAGAGTGGTACTTCTTTTCACCACGGGACC
genomic: CATCATCGCCGAAATCGACCTCTACAAATACGACCCCTGGGACTTACCCGgtaacataat ... tactttacagGATTGGCTACTTATGGAGAGAAAGAGTGGTACTTCTTTTCACCACGGGACC