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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTCCTTTTCGGCCACAAATTGTATCAGCTCCGCGAAGAGAGGGACATGAAGCCCCAAACTTTTGCCAGCCTCGTCTCCGCTATTCTCTACGAGAATAGgtatcaatcaattgtgtttcggattaggctaattatgtttgattttatagatgatatgcacaattctattttatgtatgtaaaaacaaattacactgttttgcctttcag

Basic information

species Glycine max
transcript GLYMA06G11930.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G11930.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os06g43570.1 (Oryza sativa), 5'ss of exon 4
GCCTCCTTTTCGGCCACAAATTGTATCAGCTCCGCGAAGAGAGGGACATGAAGCCCCAAACTTTTGCCAGCCTCGTCTCCGCTATTCTCTACGAGAATAGgtatcaatcaattgtgtttcggattaggctaattatgtttgattttatagatgatatgcacaattctattttatgtatgtaaaaacaaattacactgttttgcctttcag
||||  | ||| | |||||  ||||||| || || || |||||||||||||||||||| || || |||||||||||||||||| | ||||||||||| |||||   | | |  |  | | |   |||   |       |||| || |    |  |||    |      ||      ||  |||  | ||||  | | ||     |  |  
GCCTGGTGTTCAGGCACAAGCTGTATCAACTGCGGGAGGAGAGGGACATGAAGCCCCAGACCTTCGCCAGCCTCGTCTCCGCTCTCCTCTACGAGAAGAGgtaatgaactaaaggatgttg--ctagcgcagcgcgagttgaattga---gtagtatatgaagcagagtt----aaattcaaatgccaattggagtattcaatttcgcg-

upper sequence: GLYMA06G11930.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os02g08520.1 (Oryza sativa), 5'ss of exon 3
GCCTCCTTTTCGGCCACAAATTGTATCAGCTCCGCGAAGAGAGGGACATGAAGCCCCAAACTTTTGCCAGCCTCGTCTCCGCTATTCTCTACGAGAATAGgtatcaatcaattgtgtttcggattaggctaattatg-tttgattttatagatgatatgcacaattctattttatgtatgtaaaaacaaattacactgttttgcctttcag
| ||  | ||| | |||||| |||| |||||  | || ||||||||||||||||||||  | || || ||||||||||||||  | ||||||||||| ||||   |||      |    | | ||      || ||| | ||||  |      | | |    || |   |  | |||| | |  |  |      | | |||          
GGCTGGTGTTCAGGCACAAACTGTACCAGCTGAGGGAGGAGAGGGACATGAAGCCCCAGGCATTCGCTAGCCTCGTCTCCGCGCTCCTCTACGAGAAGAGgttagaatgctcactagccctgtttgaagatatgatgatatgatgatgatcgcgttctaagtaactggttcatgtgtaag-atgagtaggaagtaatattt----------

upper sequence: GLYMA06G11930.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G092975_T01 (Zea mays), 5'ss of exon 3
GCCTCCTTTTCGGCCACAAATTGTATCAGCTCCGCGAAGAGAGGGACATGAAGCCCCAAACTTTTGCCAGCCTCGTCTCCGCTATTCTCTACGAGAATAGgtatcaat----caattgtgtttcggattaggctaattatgtttgattttatagatgatatgcacaattctatt--ttatgtatgtaaaaacaaattacactgttttgcctttcag
|  |  | ||| | |||||  |||||||||| || || |||||||||||||||||| | || ||||||||||| ||||| ||  | ||||||||||| ||||   |||    | || ||  ||  | |     |   || | |  | |  |||||   | ||   | || | ||  || | ||||      || |  |                  
GGTTGGTGTTCAGGCACAAGCTGTATCAGCTGCGGGAGGAGAGGGACATGAAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgagaattttgctatcgtacttttggtggaattgtgtaggat--actggatagaccttctgggtagttgttttaattttttatgccctgccagagcatgga--------------

upper sequence: GLYMA06G11930.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G045371_T02 (Zea mays), 5'ss of exon 3
GCCTCCTTTTCGGCCACAAATTGTATCAGCTCCGCGAAGAGAGGGACATGAAGCCCCAAACTTTTGCCAGCCTCGTCTCCGCTATTCTCTACGAGAATAGgtatcaatcaattgtgtttcggattaggctaattatgtttgattttatagatgatatgcacaattctattttatgtatgtaaaaacaaattacactgttttgcctttcag
|  |  | ||| | |||||  |||||||||| ||||| |||||||||||||||||  | || ||||||||||| ||||| ||  | ||||||||||| ||||    ||       ||      || ||  |||| |||  |||| |    |         |   |   | |||| |   ||||     | | | |||     |       
GGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAGGGACATGAAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattttgctagtgcgcttttgggggaattgtgtaggattctgggtaaacctactgcgggtagttgttattt---taaattttgaatgcgctgccagac-------

upper sequence: GLYMA06G11930.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G117544_T01 (Zea mays), 5'ss of exon 3
GCCTCCTTTTCGGCCACAAATTGTATCAGCTCCGCGAAGAGAGGGACATGAAGCCCCAAACTTTTGCCAGCCTCGTCTCCGCTATTCTCTACGAGAATAGgtatcaatcaattgtgtttcggattaggctaattatgtttgattttatagatgatatgcacaattctattttatgtatgtaaaaacaaattacactgttttgcctttcag
| ||  | ||| | ||||| ||||| |||||    || |||||||||||||||||| |||| ||||||||||| || || ||  | ||||| ||||| ||||  ||| |       ||| |    ||  | ||| |||  |     || |    |||     |||    ||  |||   |  |   |||| ||| |    ||||      
GGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAGGGACATGAAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacccacaatttttga--cagattcatt-tgtagg----catggt--gtatctgtgatttc-cttggtgtgcatggaggtaaatcacattcacatgccgaatga