Sequence
atgc intronic sequence ATGC exonic sequenceCTTAAGAAAGGTCCCTGGACTCCCGAAGAAGATCAGAAACTAGTCCAACACATTCAGAAACATGGCCATGGAAGTTGGAGAGCCCTCCCTAAGTTAGCTGgtttgtggattaatctctggtttaattaatttatagttatatatgttgcagcaactatatagttctctcttttcagcgtttcttcattcatctatttttcttgctatttttgcag
Basic information
species | Glycine max |
transcript | GLYMA06G10840.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G10840.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os06g11780.1 (Oryza sativa), 5'ss of exon 1
CTTAAGAAAGGTCCCTGGACTCCCGAAGAAGATCAGAAACTAGTCCAACACATTCAGAAACATGGCCATGGAAGTTGGAGAGCCCTCCCTAAGTTAGCTGgtttgtggattaatctctggtttaattaatttatagttatatatgttgcagcaactatatagttctctcttttcagcgt-ttcttcattcatctatttttcttgctatttttgcag
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CTCAAGAAGGGCCCCTGGACTCCTGAAGAAGATGAGAAGCTCATGAGCTACATTCAGAAACATGGCCATGCAAGCTGGAGAGTCTTACCTGAACTTGCTGgtgcttacacc--tctctcatgcatgtcttccacaga-acatgtattcagtttcttgtatagaagtcttacttccgtatattgtttttgcag------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|213600738|gb|DB956444.1|DB956444EST: CATTCAGAAACATGGCCATGGAAGTTGGAGAGCCCTCCCTAAGTTAGCTG GTCTCAATAGATGTGGAAAAAGTTGTAGGCTAAGGTGGACTAACTATTTAA
genomic: CATTCAGAAACATGGCCATGGAAGTTGGAGAGCCCTCCCTAAGTTAGCTGgtttgtggat ... atttttgcagGTCTCAATAGATGTGGAAAAAGTTGTAGGCTAAGGTGGACTAACTATTTAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTAAGAAAGGTCCCTGGACTCCCGAAGAAGATCAGAAACTAGTCCAACACATTCAGAAACATGGCCATGGAAGTTGGAGAGCCCTCCCTAAGTTAGCTGgtttgtggattaatctctggtttaattaatttatagttatatatgttgcagcaactatatagttctctcttttcagcgtttcttcattcatctatttttcttgctatttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA