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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGGAATATTGTCCGCATCAAACGTTAGCGTATCACGCCGGTAGGGTACCTCTGTCTCTCCTCGTTTCGTACAAGTGAAACTTTCCGAGCTTAGTTCAGgtgctcagcgatacaacttttagcatttttgttccttttacttctaattatataatttcttcctttgagaccctgtctttttctttcttcgctgctaacgttaccgtttgtctctcatgcag

Basic information

species Glycine max
transcript GLYMA06G10050.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193450049|gb|FK412589.1|FK412589
EST:     CTCTGTCTCTCCTCGTTTCGTACAAGTGAAACTTTCCGAGCTTAGTTCAG                         GTTAAAGTAGTTTCGATTT
genomic: CTCTGTCTCTCCTCGTTTCGTACAAGTGAAACTTTCCGAGCTTAGTTCAGgtgctcagcg ... tctcatgcagGTTAAAGTAGTTTCGATTT
EST: gi|209716167|gb|BW668680.1|BW668680
EST:     CTCTGTCTCTCCTCGTTTCGTACAAGTGAAACTTTCCGAGCTTAGTTCAG                         GTTAAAGTAGTTTCGATTTGTTTATATGATGTCGTGCTCATCGCGTGACCT
genomic: CTCTGTCTCTCCTCGTTTCGTACAAGTGAAACTTTCCGAGCTTAGTTCAGgtgctcagcg ... tctcatgcagGTTAAAGTAGTTTCGATTTGTTTATATGATGTCGTGCTCATCGCGTGACCT
EST: gi|208335785|gb|GE133758.1|GE133758
EST:     CTCTGTCTCTCCTCGTTTCGTACAAGTGAAACTTTCCGAGCTTAGTTCAG                         GTTAAAGTGGTTTCGATTTGTTTATATGATGTCGTGCTCATCGCGTGACCT
genomic: CTCTGTCTCTCCTCGTTTCGTACAAGTGAAACTTTCCGAGCTTAGTTCAGgtgctcagcg ... tctcatgcagGTTAAAGTAGTTTCGATTTGTTTATATGATGTCGTGCTCATCGCGTGACCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTGGAATATTGTCCGCATCAAACGTTAGCGTATCACGCCGGTAGGGTACCTCTGTCTCTCCTCGTTTCGTACAAGTGAAACTTTCCGAGCTTAGTTCAGgtgctcagcgatacaacttttagcatttttgttccttttacttctaattatataatttcttcctttgagaccctgtctttttctttcttcgctgctaacgttaccgtttgtctctcatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT