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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAACACATTGAGCATCATAGGCTTGATGGAATTGTTTACTTTGCGGATGATGATAATGTGTATTCTCTCGAGTTGTTTGACGCCTTGAGAGATATCAGgtacttactttgcttctctcagttagtttattggagtgttggttttttgttattatttgtatttttttcctttggatttctgattagttctgtcgtagtg...

Basic information

species Glycine max
transcript GLYMA06G09560.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G09560.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G27600.2 (Arabidopsis thaliana), 5'ss of exon 1
TGGAACACATTGAGCATCATAGGCTTGATGGAATTGTTTACTTTGCGGATGATGATAATGTGTATTCTCTCGAGTTGTTTGACGCCTTGAGAGATATCAGgtactt-----actttgcttctctcagttagtttattggagtgttggttttttgttattatttgtatttttttcctttggatttctgattagttctgtcgtagtg
||||||| ||||||   |||| ||||||||||||||| |||||||| |||||||| ||| | || || || ||| | ||| |   ||||||| | |||||||   |     |   ||||  |  |  ||  | | |   | || ||||  |||  | | |  |  | || ||       || | | | |||  | ||   |    
TGGAACATATTGAGTTGCATAAGCTTGATGGAATTGTCTACTTTGCTGATGATGACAATATCTACTCGCTTGAGCTCTTTCAAAGCTTGAGACAAATCAGgtgactcaaaaagactgctcattacttttgctgtctctaattgatggtaattttgtgtgaaatagacttattagag--agactgcggtttatgtttgagttt---

upper sequence: GLYMA06G09560.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv18s0001g08150.t01 (Vitis vinifera), 5'ss of exon 1
TGGAACACATTGAGCATCATAGGCTTGATGGAATTGTTTACTTTGCGGATGATGATAATGTGTATTCTCTCGAGTTGTTTGACGCCTTGAGAGATATCAGgtacttactttgcttctctcagttagtttattggagtgttggttttttgttattatttgtatttttttcctttggatttctgattagttctgtcgtagtg--
| || ||||||||||| |||| ||||||||| ||||| || ||||| |||||||||||| | ||||| || ||||||||| | |  |||||||| |||||||| ||       |  | | ||||  |||  |  | |   | || | || |||   || ||||||  ||    | ||  |  |||||||   | ||  ||  
TCGAGCACATTGAGCACCATAAGCTTGATGGGATTGTATATTTTGCAGATGATGATAATATCTATTCCCTTGAGTTGTTTAAGGGTTTGAGAGAGATCAGgtattttaagctttaatttgagttgatttgatttattagagtttctatgatat-gcttttattttcatcacaagtataacatattagttggat-gtgatgtt