1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTGTCCGTCGAACATCCTCTTTTAGGGTTTACACTCTGCTTTCGGCGCCGCTCATACATAGCAGCTCCCTTTCACTTCTTCGCAACATTTCTTCGTCAAGgtatctcataattctccattcgtttcgttctatcgatttgttttctacttttctcggttatatgacaaagtaactctttttcgtgctattgatattgctt...
species | Glycine max |
transcript | GLYMA06G07700.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTCATACATAGCAGCTCCCTTTCACTTCTTCGCAACATTTCTTCGTCAAG GTGTGTTTGTATATATGTTTAATGATACTGGTCTGGAATGTCCAACAATCTEST: gi|209724273|gb|BW666615.1|BW666615
genomic: CTCATACATAGCAGCTCCCTTTCACTTCTTCGCAACATTTCTTCGTCAAGgtatctcata ... actgtttcagGTGTGTTTGTATATATGTTTAATGATACTGGTCTGGAATGTCCAACAATCT
EST: CTCATACATAGCAGCTCCCTTTCACTTCTTCGCAACATTTCTTCGTCAAG GTGTGTTTGTATATATGTTTAATGATACTGGTCTGGAATGTCCAACAATCTEST: gi|209708760|gb|BW657115.1|BW657115
genomic: CTCATACATAGCAGCTCCCTTTCACTTCTTCGCAACATTTCTTCGTCAAGgtatctcata ... actgtttcagGTGTGTTTGTATATATGTTTAATGATACTGGTCTGGAATGTCCAACAATCT
EST: CTCATACATAGCAGCTCCCTTTCACTTCTTCGCAACATTTCTTCGTCAAG GTGTGTTTGTATATATGTTTAATGATACTGGTCTGGAATGTCCAACAATCT
genomic: CTCATACATAGCAGCTCCCTTTCACTTCTTCGCAACATTTCTTCGTCAAGgtatctcata ... actgtttcagGTGTGTTTGTATATATGTTTAATGATACTGGTCTGGAATGTCCAACAATCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGTCCGTCGAACATCCTCTTTTAGGGTTTACACTCTGCTTTCGGCGCCGCTCATACATAGCAGCTCCCTTTCACTTCTTCGCAACATTTCTTCGTCAAGgtatctcataattctccattcgtttcgttctatcgatttgttttctacttttctcggttatatgacaaagtaactctttttcgtgctattgatattgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC