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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTTTTGTTGATGATAAACTTAGACCTGGTTTGAAGGCTCAGCCTCTGGCTGTGAAACAACTGGACTTGGATGGCTTGCAAGGTCACAGGGAGTGGCTGgttagtttgtgtttttttttttttgtttcacttcattctagtattagtgacaaatcaatttacaagtattactcttatggataaaatccagctaatgaaacaaggttcaagaatatctgatacttgtttgcctggcacatattttcttttatag

Basic information

species Glycine max
transcript GLYMA06G05990.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G05990.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv04s0008g02070.t01 (Vitis vinifera), 5'ss of exon 1
GGGTTTTGTTGATGATAAACTTAGACCTGGTTTGAAGGCTCAGCCTCTGGCTGTGAAACAACTGGACTTGGATGGCTTGCAAGGTCACAGGGAGTGGCTGgttagtttgtgtttttttttttttgtttcacttcattctagtattagtgacaaatcaatttacaagtattactcttatggataaaatccagctaatgaaacaaggttcaagaatatctgatacttgtttgcctggcacatattttcttttatag
||| ||  | || || || ||||| ||    ||||||||||||||| | |||||||||  ||| |||||||||||| | ||||| || || || ||||||||| |||| ||   |      ||  || | | |  ||||  ||||          |  | || |  || |     | | | | || ||   |   |    |  || || | || ||| | |  ||  | |                        
GGGGTTCATAGACGAAAAGCTTAGGCCAAAGTTGAAGGCTCAGCCTGTAGCTGTGAAATTACTTGACTTGGATGGCCTTCAAGGCCATAGAGAATGGCTGgtttgtttctgaactgacgaatt-attccccatagttcttatatt----------ctgtgtatagatactgtgtcttttggtcaattcttccacct----cttggatcgataaaatcgggttttttgtag------------------------