Sequence
atgc intronic sequence ATGC exonic sequenceGGGGAATAGGATTGCTGCTCCCAGGTTGCTCAAGCTCAACCCTCTTGATTCACATTTGGCTGGAGCGAATAATAAGTTCCGCAATGCTCAGTTTTCGTGGgtaagtgtgaattgaattctctgcttacttggcggttttgcttatttttgtttctgctcttatcttgcaaattatttttgtttctcatgatattgatgtc...
Basic information
species | Glycine max |
transcript | GLYMA06G04290.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G04290.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os02g08190.1 (Oryza sativa), 5'ss of exon 1
GGGGAATAGGATTGCTGCTCCCAGGTTGCTCAAGCTCAACCCTCTTGATTCACATTTGGCTGGAGCGAATAATAAGTTCCGCAATGCTCAGTTTTCGTGGgtaagtgtgaattgaattctctgcttacttggcggttttgcttatt--tttgtttctgctcttatcttgcaaattatttttgtttctcatgatattgatgtc
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GGGCAACAGAATTGCTGCCCCAAGGTTGCTCAAGCTGACCCCGCTTGATTCACATCTTGCTGGACAGAATAATATATTCCGTGAAGGGAGGTTCTCATGGgtgagtatagccttccacttcatttcaatttacttttttgtgcattaaccaagatcaattcacatggttaaaactgtcttttgttatctcgcgcattctg--
upper sequence: GLYMA06G04290.1 (Glycine max), 5'ss of exon 1
lower sequence: AT4G33400.1 (Arabidopsis thaliana), 5'ss of exon 1
GGGGAATAGGATTGCTGCTCCCAGGTTGCTCAAGCTCAACCCTCTTGATTCACATTTGGCTGGAGCGAATAATAAGTTCCGCAATGCTCAGTTTTCGTGGgtaagtgtgaattgaattc---tctgcttacttggcggttttgct-tatttttgtttctgctcttatcttgcaaattatttttgtttctcatgatattgatgtc
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GGGAAATAAGATTGCCGCACCAAGGTTGCTTAAGTTGAGGCCTCTTGATGCACATTTAGCTGGATCTGACAACAAGTTCCGCAATGCTCAGTTTTCTTGGgtaagcagaactctagttgcagtgtatattcttgctgagaaagtgacattcttgaaatt-ttcatgttttgctcat-agcataagtgcatataatattgaag--
upper sequence: GLYMA06G04290.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv18s0001g10540.t01 (Vitis vinifera), 5'ss of exon 1
GGGGAATAGGATTGCTGCTCCCAGGTTGCTCAAGCTCAACCCTCTTGATTCACATTTGGCTGGAGCGAATAATAAGTTCCGCAATGCTCAGTTTTCGTGGgtaagtgtgaattgaattctctgcttacttggcggttttgcttatttttgtttctgctcttatcttgcaaattat--ttttgtttctcatgatattgatgtc
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GGGGAATAGAATCTCAGCCCCAAGATTGTTGAAGCTCACTCCTTTGGATTCGCATCTCGCTGGAGTAAACAATAAGTTCCGCGGTGCTCAGTTTTCGTGGgtatgtttgcaccttctctttctcatattta-cgtttgctagtatttttttttatttttcttgttgccagcctgcggtttaatgtatttcactattcattt-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15813882|gb|BI786157.1|BI786157EST: CACATTTGGCTGGAGCGAATAATAAGTTCCGCAATGCTCAGTTTTCGTGG GTGACAGAGAATGGGAAACAGGAGCGACATATAGTAGCCACCGGTGGG
genomic: CACATTTGGCTGGAGCGAATAATAAGTTCCGCAATGCTCAGTTTTCGTGGgtaagtgtga ... ggtgtcttagGTGACAGAGAATGGGAAACAGGAGCGACATATAGTAGCCACCG-TGGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGGGAATAGGATTGCTGCTCCCAGGTTGCTCAAGCTCAACCCTCTTGATTCACATTTGGCTGGAGCGAATAATAAGTTCCGCAATGCTCAGTTTTCGTGGgtaagtgtgaattgaattctctgcttacttggcggttttgcttatttttgtttctgctcttatcttgcaaattatttttgtttctcatgatattgatgtc
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