Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCTTTTAGTTTGCTTCTTCAACATTGCTGTTGCTCTCTACGTTCTTCGCTCTCTCTATGCTTCTCTTTACATCTACTCCGGAAACGTTTCCCGCAACGgtaagttactaactaacaccaatcaatttcctctctatgtttccttttaacactaataataacggttgctgcatgagggttttctttttcag

Basic information

species Glycine max
transcript GLYMA06G04180.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G04180.1 (Glycine max), 5'ss of exon 1
lower sequence: AT4G33380.1 (Arabidopsis thaliana), 5'ss of exon 1
---ACTCTTTTAGTTTGCTTCTTCAACATTGCTGTTGCTCTCTACGTTCTTCGCTCTCTCTATGCTTCT---CTTTACATCTACTCCGGAAACGTTTCCCGCAACGgtaagttactaactaaca-ccaatcaatttcctctctatgtttccttttaacactaataataacggttgctgcatgagggttttctttttcag
   |||||  | |||||||| |||||||||    |||||||||  |||||||||| |||||||||||||   ||  ||||||| |||   |||| |      || |||    ||||   ||    ||  |  ||||   |||| || ||| |  |||  |   ||      |  |||   |  |  |||| || |||||
ATCACTCTACTTGTTTGCTTTTTCAACATTCTCATTGCTCTCTTTGTTCTTCGCTTTCTCTATGCTTCTTCTCTCCACATCTATTCCAATAACGAT------AATGgttc-ctactttttattttccttttcatttttgctctctgattcatgataattc--gtatctgaagcagctctgttggttttttgttattcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6718619|gb|AW306266.1|AW306266
EST:     CTCTCTCTATGCTTCTCTTTACATCTACTCCGGAAACGTTTCCCGCAACG                         CTGCGTTGTATAGCCCAGATCAGATTCGGAAAATGGAGGAATCAATCCAAA
genomic: CTCTCTCTATGCTTCTCTTTACATCTACTCCGGAAACGTTTCCCGCAACGgtaagttact ... tctttttcagCTGCGTTGTATAGCCCAGATCAGATTCGGAAAATGGAGGAATCAATCCAAA