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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCCCAAGTTGTGCTGAATGATAATGGTAACTACGGCAAATTCTCACACCTACTTGCTTCCCAAGATCGTGATTATCTTCTCTCTCCAACTGGGGCTCAGgttctctattcttacaactttctctagttttgtaagagttataaaattattcagagagtccttcgggtaataactgaaaataaatactagtatacagtat...

Basic information

species Glycine max
transcript GLYMA06G02380.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15001138|gb|BI321952.1|BI321952
EST:     TACTTGCTTCCCAAGATCGTGATTATCTTCTCTCTCCAACTGGGGCTCAG                         GTGAAAGTTTCTGATCTTGAAGGGAGAGTAGTGGGTCTATTATTCGCTGCG
genomic: TACTTGCTTCCCAAGATCGTGATTATCTTCTCTCTCCAACTGGGGCTCAGgttctctatt ... gtggatgcagGTGAAAGTTTCTGATCTTGAAGGGAGAGTAGTGGGTCTATTATTCGCTGCG
EST: gi|15814609|gb|BI786884.1|BI786884
EST:     TACTTGCTTCCCAAGATCGTGATTATCTTCTCTCTCCAACTGGGGCTCAG                         GTGAAAGTTTCTGATCTTGAAGGGAGAGTAGTGGGTCTATTATTCGCTGCG
genomic: TACTTGCTTCCCAAGATCGTGATTATCTTCTCTCTCCAACTGGGGCTCAGgttctctatt ... gtggatgcagGTGAAAGTTTCTGATCTTGAAGGGAGAGTAGTGGGTCTATTATTCGCTGCG
EST: gi|22540385|gb|BU090228.1|BU090228
EST:     TACTTGCTTCCCAAGATCGTGATTATCTTCTCTCTCCAACTGGGGCTCAG                         GTGAAAGTTTCTGATCTTGAAGGGAGAGTAGTGGGTCTATTATTCGCTGCG
genomic: TACTTGCTTCCCAAGATCGTGATTATCTTCTCTCTCCAACTGGGGCTCAGgttctctatt ... gtggatgcagGTGAAAGTTTCTGATCTTGAAGGGAGAGTAGTGGGTCTATTATTCGCTGCG
EST: gi|213617565|gb|DB969277.1|DB969277
EST:     TACTTGCTTCCCAAGATCGTGATTATCTTCTCTCTCCAACTGGGGCTCAG                         GTGAAAGTTTCTGATCTTGAAGGGAGAGTAGTGGGTCTATTATTCGCTGCG
genomic: TACTTGCTTCCCAAGATCGTGATTATCTTCTCTCTCCAACTGGGGCTCAGgttctctatt ... gtggatgcagGTGAAAGTTTCTGATCTTGAAGGGAGAGTAGTGGGTCTATTATTCGCTGCG
EST: gi|209720787|gb|BW657761.1|BW657761
EST:     TACTTGCTTCCCAAGATCGTGATTATCTTCTCTCTCCAACTGGGGCTCAG                         GTGAAAGTTTCTGATCTTGAAGGGAGAGTAGTGGGTCTATTATTCGCTGCG
genomic: TACTTGCTTCCCAAGATCGTGATTATCTTCTCTCTCCAACTGGGGCTCAGgttctctatt ... gtggatgcagGTGAAAGTTTCTGATCTTGAAGGGAGAGTAGTGGGTCTATTATTCGCTGCG
EST: gi|209729722|gb|BW669822.1|BW669822
EST:     TACTTGCTTCCCAAGATCGTGATTATCTTCTCTCTCCAACTGGGGCTCAG                         GTGAAAGTTTCTGATCTTGAAGGGAGAGTAGTGGGTCTATTATTCGCTGCG
genomic: TACTTGCTTCCCAAGATCGTGATTATCTTCTCTCTCCAACTGGGGCTCAGgttctctatt ... gtggatgcagGTGAAAGTTTCTGATCTTGAAGGGAGAGTAGTGGGTCTATTATTCGCTGCG
EST: gi|12489600|gb|BG043121.1|BG043121
EST:     TACTTGCTTCCCAAGATCGTGATTATCTTCTCTCTCCAACTGGGGCTCAG                         GTGAAAGTTTCTGATCTTGAAGGGAGAGTAGTGGGTCTATTATTCGCTGCG
genomic: TACTTGCTTCCCAAGATCGTGATTATCTTCTCTCTCCAACTGGGGCTCAGgttctctatt ... gtggatgcagGTGAAAGTTTCTGATCTTGAAGGGAGAGTAGTGGGTCTATTATTCGCTGCG
EST: gi|16349468|gb|BI975063.1|BI975063
EST:     TACTTGCTTCCCAAGATCGTGATTATCTTCTCTCTCCAACTGGGGCTCAG                         GTGAAAGTTTCTGATCTTGAAGGGAGAGTAGTGGGTCTATTATTCGCTGCG
genomic: TACTTGCTTCCCAAGATCGTGATTATCTTCTCTCTCCAACTGGGGCTCAGgttctctatt ... gtggatgcagGTGAAAGTTTCTGATCTTGAAGGGAGAGTAGTGGGTCTATTATTCGCTGCG
EST: gi|213591335|gb|DB959877.1|DB959877
EST:     TACTTGCTTCCCAAGATCGTGATTATCTTCTCTCTCCAACTGGGGCTCAG                         GTGAAAGTTTCTGATCTTGAAGGGAGAGTAGTGGGTCTATTATTCGCTGCG
genomic: TACTTGCTTCCCAAGATCGTGATTATCTTCTCTCTCCAACTGGGGCTCAGgttctctatt ... gtggatgcagGTGAAAGTTTCTGATCTTGAAGGGAGAGTAGTGGGTCTATTATTCGCTGCG
EST: gi|16105486|gb|BI893226.1|BI893226
EST:     TACTTGCTTCCCAAGATCGTGATTATCTTCTCTCTCCAACTGGGGCTCAG                         GTGAAAGTTTCTGATCTTGAAGGGAGAGTAGTGGGTCTATTATTCGCTGCG
genomic: TACTTGCTTCCCAAGATCGTGATTATCTTCTCTCTCCAACTGGGGCTCAGgttctctatt ... gtggatgcagGTGAAAGTTTCTGATCTTGAAGGGAGAGTAGTGGGTCTATTATTCGCTGCG
EST: gi|22541185|gb|BU091028.1|BU091028
EST:     GTGATTATCTTCTCTCTCCAACTGGGGCTCAG                         GTGAAAGTTTCTGATCTTGAAGGGAGAGTAGTGGGTCTATTATTCGCTGCG
genomic: GTGATTATCTTCTCTCTCCAACTGGGGCTCAGgttctctatt ... gtggatgcagGTGAAAGTTTCTGATCTTGAAGGGAGAGTAGTGGGTCTATTATTCGCTGCG