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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCGGATGTTCTTGATTCGGCGTTGTTGAGGCCTGGCCGGTTCGATAGGCAAGTTACTGTGGATAGACCTGATGTTGCCGGCAGAGTTAAAATCCTTCAGgtgagtctgtctcagccataacataacatcataacccttttgatattgttattgttctttaattactgttactagtattagaatttcacttccataacct...

Basic information

species Glycine max
transcript GLYMA06G02200.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G02200.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G50250.1 (Arabidopsis thaliana), 5'ss of exon 1
ACCGGATGTTCTTGATTCGGCGTTGTTGAGGCCTGGCCGGTTCGATAGGCAAGTTACTGTGGATAGACCTGATGTTGCCGGCAGAGTTAAAATCCTTCAGgtgagtctgtctcagccataacataacatcataacccttttgatattgttattgt-tctttaattactgttactagtattagaatttcacttccataacct
 ||||| |||||||||||||| ||||||||||||||  |||| ||| | || || || |||||||| |||||||| || |||||||| || || ||||||||     | ||  |||  |   ||||     | ||   ||||    ||   || | |   | |||  | || ||     | |  |||   ||   |     
GCCGGACGTTCTTGATTCGGCTTTGTTGAGGCCTGGAAGGTTTGATCGACAGGTCACGGTGGATAGGCCTGATGTGGCTGGCAGAGTCAAGATTCTTCAGgtt--cttttcatagctgttttataaag--gttactggtttgtctatggagttatgtgaatgattcttatttctctctatggggtttggttttattttag-

upper sequence: GLYMA06G02200.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G42270.1 (Arabidopsis thaliana), 5'ss of exon 1
ACCGGATGTTCTTGATTCGGCGTTGTTGAGGCCTGGCCGGTTCGATAGGCAAGTTACTGTGGATAGACCTGATGTTGCCGGCAGAGTTAAAATCCTTCAGgtgagtctgtctcagccataacataacatcataacccttttgatattgttattgttctttaattactgttactagtattagaatttcacttccataacct
||||||||||||||| || |||||| |||| |||||  | || ||  ||||||| || |||||||| |||||||| ||||| |||||| | |||||| ||||   | | |  |   |||    |   |   | |  |  | || |  ||  | ||   | |  |  |||   |  |   ||                   
ACCGGATGTTCTTGACTCCGCGTTGCTGAGACCTGGTAGATTTGACCGGCAAGTCACAGTGGATAGGCCTGATGTAGCCGGAAGAGTTCAGATCCTTAAGgtttct-tcttgctttcattttctgttagagtgaaacaatggagacagt-gtggtgaataatgttgtgtggtttattgcag-------------------

upper sequence: GLYMA06G02200.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv18s0001g00190.t01 (Vitis vinifera), 5'ss of exon 1
ACCGGATGTTCTTGATTCGGCGTTGTTGAGGCCTGGCCGGTTCGATAGGCAAGTTACTGTGGATAGACCTGATGTTGCCGGCAGAGTTAAAATCCTTCAGgtgagtctgtct-cagccataacataacatcataacccttttgata-ttgttattgttctttaattactgttactagtattagaatttcacttccataacct
||| || ||||||||||| || ||| | ||||||||  |||||||| | || |||||||||||||| ||||||||||| || |||||||| ||||||||||| ||| | |   ||  |    | ||      | |  | |||| |  ||||  ||| | |      || | |  ||| || | |||      |    ||  |
ACCAGACGTTCTTGATTCTGCATTGCTAAGGCCTGGGAGGTTCGATCGACAGGTTACTGTGGATAGGCCTGATGTTGCTGGTAGAGTTAAGATCCTTCAGgttagtttattcacaaaccctgcttattgc--ttattcatttgctgcttgtggttggtgtcgtcacacagattttagaatcaaaatgcgctgtatggaaatt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193535975|gb|FK491301.1|FK491301
EST:     AAGTTACTGTGGATAGACCTGATGTTGCCGGCAGAGTTAAAATCCTTCAG                         GTGCATTCTAGAGGAAAAGCGCTTGCAAAGGATGTTGATTTTGAAAAAA
genomic: AAGTTACTGTGGATAGACCTGATGTTGCCGGCAGAGTTAAAATCCTTCAGgtgagtctgt ... tctctctcagGTGCATTCTAGAGGAAAAGCGCTTGCAAAGGATGTTGATTTTGAAAAAA
EST: gi|208216597|gb|GE013425.1|GE013425
EST:     AAGTTACTGTGGATAGACCTGATGTTGCCGGCAGAGTTAAAATCCTTCAG                         GTGCATTCTAGAGGAAAAGCGCTTGCAAAGGATGTTGATTTTGAAAAAATT
genomic: AAGTTACTGTGGATAGACCTGATGTTGCCGGCAGAGTTAAAATCCTTCAGgtgagtctgt ... tctctctcagGTGCATTCTAGAGGAAAAGCGCTTGCAAAGGATGTTGATTTTGAAAAAATT