Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTACGAATTCACGCCGTAAAACTATCCTGATTGTGTGATTGCAGTATCCGTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttcactcgcttttgatccaaccatgaattgtttgtttctcttacgattcgacgcttcttactgtgaaataatcaaaaaagctaaggttcacgaa...

Basic information

species Glycine max
transcript GLYMA06G01970.4
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254326362|gb|GR840954.1|GR840954
EST:     CAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: CAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|208034727|gb|GD835925.1|GD835925
EST:     TGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: TGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|193412182|gb|FK376475.1|FK376475
EST:     CTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: CTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|31466365|gb|CD408393.1|CD408393
EST:     GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|193637562|gb|FK584501.1|FK584501
EST:     AGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: AGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|5606315|gb|AI900413.1|AI900413
EST:     GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|208128981|gb|GD927581.1|GD927581
EST:     GCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: GCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|11412161|gb|BF424172.1|BF424172
EST:     GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|21285902|gb|BQ473773.1|BQ473773
EST:     GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|207699154|gb|GD679376.1|GD679376
EST:     AAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: AAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|15337555|gb|BI498211.1|BI498211
EST:     GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|10709974|gb|BF009698.1|BF009698
EST:     GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|14258982|gb|BG881890.1|BG881890
EST:     GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|15814902|gb|BI787177.1|BI787177
EST:     GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|254314868|gb|GR829861.1|GR829861
EST:     GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|193515293|gb|FK472855.1|FK472855
EST:     CCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: CCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|207798341|gb|GD769521.1|GD769521
EST:     GAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: GAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|6666478|gb|AW277996.1|AW277996
EST:     GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|5175561|gb|AI759894.1|AI759894
EST:     GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|254347454|gb|GR853703.1|GR853703
EST:     GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|120529373|gb|EH257507.1|EH257507
EST:     GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|208193761|gb|GD993360.1|GD993360
EST:     TGAAAGGAGGAAAGTCCAAGACCGGATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: TGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|10844115|gb|BF067452.1|BF067452
EST:     GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|10843975|gb|BF067321.1|BF067321
EST:     GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|14011885|gb|BG726807.1|BG726807
EST:     GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|151401604|gb|EV271418.1|EV271418
EST:     GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|193336580|gb|FK304038.1|FK304038
EST:     GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|6483249|gb|AW202419.1|AW202419
EST:     CATGAAAGGAGNGAAAGTCCAAGAACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: CATGAAAGGAG-GAAAGTCCAAG-ACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|254319927|gb|GR829223.1|GR829223
EST:     GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|208088079|gb|GD888113.1|GD888113
EST:     CCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: CCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|4314140|gb|AI461259.1|AI461259
EST:     GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|7925146|gb|AW831172.1|AW831172
EST:     GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|14126389|gb|BG790827.1|BG790827
EST:     GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|19348664|gb|BM893196.1|BM893196
EST:     CCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: CCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|207757617|gb|GD728223.1|GD728223
EST:     CCGAATCTAAGAGAGCCGATCCCAAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCG
genomic: CCGAATCTAAGAGAGCCGATCCC-AAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCG
EST: gi|254314553|gb|GR829546.1|GR829546
EST:     GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|193455924|gb|FK417031.1|FK417031
EST:     GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|9819303|gb|BE554816.1|BE554816
EST:     GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|10235887|gb|BE804775.1|BE804775
EST:     GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|193680172|gb|FK620774.1|FK620774
EST:     AAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCGA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCATCAAGGCTAGGAAACCCGCCGG
genomic: AAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|17153807|gb|BM143740.1|BM143740
EST:     GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|4313603|gb|AI460722.1|AI460722
EST:     GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|193474716|gb|FK440573.1|FK440573
EST:     AAAGGAGGAAAGTCCAAGACCGAATCTAAGAGTGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: AAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|120530385|gb|EH258518.1|EH258518
EST:     GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|254345252|gb|GR855802.1|GR855802
EST:     GTCATGAAAGGAGGAAAGTCCAAGACCGAATCT-AGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|23064555|gb|BU579328.1|BU579328
EST:     GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|254345251|gb|GR855801.1|GR855801
EST:     GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|120492605|gb|EH220772.1|EH220772
EST:     AAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: AAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|31471501|gb|CD413529.1|CD413529
EST:     GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|7030136|gb|AW459919.1|AW459919
EST:     GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|193361206|gb|FK327278.1|FK327278
EST:     GAATCTAAGAGAGTCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: GAATCTAAGAGAG-CCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|254336737|gb|GR842916.1|GR842916
EST:     GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|23734008|gb|BU765224.1|BU765224
EST:     GAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: GAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|4405735|gb|AI507884.1|AI507884
EST:     GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|208186012|gb|GD985409.1|GD985409
EST:     TGAAAGGAGGAAAGTCCAAGACCGGATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: TGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|105634685|gb|DW247635.1|DW247635
EST:     GTCATGAATGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|298179644|gb|HO024859.1|HO024859
EST:     GAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCGCCAAGGCTAGGAAACCCGCCGG
genomic: GAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|254330432|gb|GR841697.1|GR841697
EST:     GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|58014560|gb|CX701302.1|CX701302
EST:     CATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: CATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|208192783|gb|GD988350.1|GD988350
EST:     TGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACCTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: TGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|207771429|gb|GD745312.1|GD745312
EST:     CCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: CCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|208282859|gb|GE076029.1|GE076029
EST:     AAGGAGGAAAGTCCAAGACCGGATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: AAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|193629460|gb|FK575930.1|FK575930
EST:     AAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: AAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|208053200|gb|GD853533.1|GD853533
EST:     AGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: AGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|6501931|gb|AW203304.1|AW203304
EST:     CGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: CGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|254320812|gb|GR827261.1|GR827261
EST:     GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|208055715|gb|GD854122.1|GD854122
EST:     GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCTGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|120496751|gb|EH224918.1|EH224918
EST:     GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|163918397|gb|EH039111.1|EH039111
EST:     GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGGAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|193658600|gb|FK604253.1|FK604253
EST:     CCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: CCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|26057292|gb|CA800206.1|CA800206
EST:     GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|22522524|gb|BU081335.1|BU081335
EST:     GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|7029697|gb|AW459480.1|AW459480
EST:     GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCTG
genomic: GTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
EST: gi|24135938|gb|BU926448.1|BU926448
EST:     ATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG
genomic: ATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttca ... tgaatttcagACTTGCTGTGAATAAGAAGGGAGCCGCCACCAAGGCTAGGAAACCCGCCGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTACGAATTCACGCCGTAAAACTATCCTGATTGTGTGATTGCAGTATCCGTCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAAgtaagtttcactcgcttttgatccaaccatgaattgtttgtttctcttacgattcgacgcttcttactgtgaaataatcaaaaaagctaaggttcacgaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA