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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAATCAATTTTTAGGGTTTCTGATTCCTTTATGTGTTTGTCTCGCAATTGATCATCGCAACCACAATGTCCGGTCCCCTCGATCGTTTTGCCAGACCTTgtgtgtccctcttccttcaaaaaattatgcctaactgttgtgacaccacaatctgctggtttgattgattgattgtggattttgcag

Basic information

species Glycine max
transcript GLYMA06G01260.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213598784|gb|DB968255.1|DB968255
EST:     GATCATCGCAACCACAATGTCCGGTCCCCTCGATCGTTTTGCCAGACCTT                         GCTTTGAGGGGTTTTCGGGCAGTGATGAGAAGAAGGAGAGGAGATCTGACT
genomic: GATCATCGCAACCACAATGTCCGGTCCCCTCGATCGTTTTGCCAGACCTTgtgtgtccct ... gattttgcagGCTTTGAGGGGTTTTCGGGCAGTGATGAGAAGAAGGAGAGGAGATCTGACT
EST: gi|18039820|gb|BM308114.1|BM308114
EST:     GATCATCGCAACCACAATGTCCGGTCCCCTCGATCGTTTTGCCAGACCTT                         GCTTTGAGGGGTTTTCGGGCAGTGATGAGAAGAAGGAGAGGAGATCTGACT
genomic: GATCATCGCAACCACAATGTCCGGTCCCCTCGATCGTTTTGCCAGACCTTgtgtgtccct ... gattttgcagGCTTTGAGGGGTTTTCGGGCAGTGATGAGAAGAAGGAGAGGAGATCTGACT
EST: gi|23727059|gb|BU761546.1|BU761546
EST:     GATCATCGCAACCACAATGTCCGGTCCCCTCGATCGTTTTGCCAGACCTT                         GCTTTGAGGGGTTTTCGGGCAGTGATGAGAAGAAGGAGAGGAGATCTGACT
genomic: GATCATCGCAACCACAATGTCCGGTCCCCTCGATCGTTTTGCCAGACCTTgtgtgtccct ... gattttgcagGCTTTGAGGGGTTTTCGGGCAGTGATGAGAAGAAGGAGAGGAGATCTGACT
EST: gi|209697050|gb|BW667040.1|BW667040
EST:     GATCATCGCAACCACAATGTCCGGTCCCCTCGATCGTTTTGCCAGACCTT                         GCTTTGAGGGGTTTTCGGGCAGTGATGAGAAGAAGGAGAGGAGATCTGACT
genomic: GATCATCGCAACCACAATGTCCGGTCCCCTCGATCGTTTTGCCAGACCTTgtgtgtccct ... gattttgcagGCTTTGAGGGGTTTTCGGGCAGTGATGAGAAGAAGGAGAGGAGATCTGACT
EST: gi|209723879|gb|BW675225.1|BW675225
EST:     GATCATCGCAACCACAATGTCCGGTCCCCTCGATCGTTTTGCCAGACCTT                         GCTTTGAGGGGTTTTCGGGCAGTGATGAGAAGAAGGAGAGGAGATCTGACT
genomic: GATCATCGCAACCACAATGTCCGGTCCCCTCGATCGTTTTGCCAGACCTTgtgtgtccct ... gattttgcagGCTTTGAGGGGTTTTCGGGCAGTGATGAGAAGAAGGAGAGGAGATCTGACT
EST: gi|213587825|gb|DB959649.1|DB959649
EST:     GATCATCGCAACCACAATGTCCGGTCCCCTCGATCGTTTTGCCAGACCTT                         GCTTTGAGGGGTTTTCGGGCAGTGATGAGAAGAAGGAGAGGAGATCTGACT
genomic: GATCATCGCAACCACAATGTCCGGTCCCCTCGATCGTTTTGCCAGACCTTgtgtgtccct ... gattttgcagGCTTTGAGGGGTTTTCGGGCAGTGATGAGAAGAAGGAGAGGAGATCTGACT
EST: gi|213607792|gb|DB959117.1|DB959117
EST:     GATCATCGCAACCACAATGTCCGGTCCCCTCGATCGTTTTGCCAGACCTT                         GCTTTGAGGGGTTTTCGGGCAGTGATGAGAAGAAGGAGAGGAGATCTGACT
genomic: GATCATCGCAACCACAATGTCCGGTCCCCTCGATCGTTTTGCCAGACCTTgtgtgtccct ... gattttgcagGCTTTGAGGGGTTTTCGGGCAGTGATGAGAAGAAGGAGAGGAGATCTGACT