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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGCTACACGAAGCTCGATGCTGTCGGAAACGACGATTTCTTCTGTCGTTTTGAGTACAATTCCTCCACCGGCGCCTTCAATCCTGATAGAGTTGCCGTgtgagtccatcactactccgatatatatatatatattctgttataagctctgctgcgctaaattcgcaataaattgttcttgtttttggtaggatttcgt...

Basic information

species Glycine max
transcript GLYMA06G01180.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G01180.2 (Glycine max), 5'ss of exon 1
lower sequence: AT4G39100.1 (Arabidopsis thaliana), 5'ss of exon 2
AGAGCTACACGAAGCTCGATGCTGTCGGAAACGACGATTTCTTCTGTCGTTTTGAGTACAATTCCTCCACCGGCGCCTTCAATCCTGATAGAGTTGCCGTgtgagtccatcactactccgatatatatatatatattctgttataagctctgct---gcgctaaattcgcaataaattgttctt-gtttttggtaggatttcgt
  |||||||| || || ||  |||| ||||||||||| |||||||||||||| |||||||||||| | |||||||| ||  ||||||| |||||  ||||||  ||   |  ||||  |  | | |   | ||| |   |    ||   ||| |     | |  |      ||   |||   |  |  |||  | | | || | 
GTAGCTACACCAAACTTGACTCTGTTGGAAACGACGACTTCTTCTGTCGTTTCGAGTACAATTCCACTACCGGCGCGTTTGATCCTGACAGAGTCACCGTgtatgt--gttcctacgactctctgttactttat-tcgagaagaaaatactgattgaatgatggaactattatcggttgaattgaggcttttttggaaattag-

upper sequence: GLYMA06G01180.2 (Glycine max), 5'ss of exon 1
lower sequence: Vv03s0038g00160.t01 (Vitis vinifera), 5'ss of exon 2
AGAGCTACACGAAGCTCGATGCTGTCGGAAACGACGATTTCTTCTGTCGTTTTGAGTACAATTCCTCCACCGGCGCCTTCAATCCTGATAGAGTTGCCGTgtgagtccatcactactccgatatatatatatatattctgttataagctctgctgcgctaaattcgca-ataaat-tgttcttgtttttggtaggatt-tcgt
|||||||||| ||||| |||||||| || ||||||||||||||||||||||||||||||||||| || || || || |||||||| |||||||| || ||||  ||     | |  |||| ||| |  ||  || ||  |||   |  |    ||  |||  |||    ||| || | |      ||| || | | |  |  |
AGAGCTACACTAAGCTTGATGCTGTTGGGAACGACGATTTCTTCTGTCGTTTTGAGTACAATTCGTCTACAGGAGCATTCAATCCCGATAGAGTGGCTGTgtacgttt-cgaattttccggtattttgatcaatttttggttc--aattaatatgatctagtttcttttatatatatataacaaatttaggcatgctaattat

upper sequence: GLYMA06G01180.2 (Glycine max), 5'ss of exon 1
lower sequence: PP1S133_46V6.1 (Physcomitrella patens), 5'ss of exon 2
AGAGCTACACGAAGCTCGATGCTGTCGGAAACGACGATTTCTTCTGTCGTTTTGAGTACAATTCCTCCACCGGCGCCTTCAATCCTGATAGAGTTGCCGTgtgagtccatcactactccgatatatatatatatattctgttataagctctgctgcgctaaattcgcaataaattgttcttgtttttggtaggatttcgt-----
| | | |||| || || ||    || || |  || || |  |||||||| || || |||||  | ||||| ||||| |||| ||||||| ||||||||||||||||   |  | | |  | |  ||   |  | |    ||    || | |  |    |   ||   | | |   ||   ||  |     || ||   ||     
AAAACCACACAAAACTGGAAAGCGTTGGTACTGAAGACTATTTCTGTCGCTTCGAATACAAAGCTTCCACTGGCGCGTTCAGTCCTGATCGAGTTGCCGTgtgagtaattttccaattagtttaatcagttcaga----gtagggagttgtattttattggttttatacttaggagtcactggctacaa-agtatccagtatcat

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6963868|gb|AW432561.1|AW432561
EST:     TTGAGTACAAATTC-TCCACCGGCGCCTTCAATCCTGATAGAGTTGCCGT                         GTATTGTAAATGTGAGATGCCTTACAACCATGATGACCTGATGGTGCAGTG
genomic: TTGAGTACAA-TTCCTCCACCGGCGCCTTCAATCCTGATAGAGTTGCCGTgtgagtccat ... ttcattgcagGTATTGTAAATGTGAGATGCCTTACAACCCTGATGACCTAATGGTGCAATG
EST: gi|58019940|gb|CX706682.1|CX706682
EST:     TTTGAGTACAATTCCTCCACCGGCGCCTTCAATCCTGATAGAGTTGCCGT                         GTATTGTAAATGTGAGATGCCTTACAACCCTGATGACCTAATGGTGCAATG
genomic: TTTGAGTACAATTCCTCCACCGGCGCCTTCAATCCTGATAGAGTTGCCGTgtgagtccat ... ttcattgcagGTATTGTAAATGTGAGATGCCTTACAACCCTGATGACCTAATGGTGCAATG
EST: gi|9985362|gb|BE659470.1|BE659470
EST:     TTTGAGTACAATTCCTCCACCGGCGCCTTCAATCCTGATAGAGTTGCCGT                         GTATTGTAAATGTGAGATGCCTTNNAACCCTGATGACCTAATGGTGCAATG
genomic: TTTGAGTACAATTCCTCCACCGGCGCCTTCAATCCTGATAGAGTTGCCGTgtgagtccat ... ttcattgcagGTATTGTAAATGTGAGATGCCTTACAACCCTGATGACCTAATGGTGCAATG
EST: gi|208042660|gb|GD842668.1|GD842668
EST:     TTTGAGTACAATTCCTCCACCGGCGCCTTCAATCCTGATAGAGTTGCCGT                         GTATTGTAAATGTGAGATGCCTTACAACCCTGATGACCTAATGGTGCAATG
genomic: TTTGAGTACAATTCCTCCACCGGCGCCTTCAATCCTGATAGAGTTGCCGTgtgagtccat ... ttcattgcagGTATTGTAAATGTGAGATGCCTTACAACCCTGATGACCTAATGGTGCAATG
EST: gi|254336272|gb|GR842451.1|GR842451
EST:     TAGAGTTGCCGT                         GTATTGTAAATGTGAGATGCCTTACAACCCTGATGACCTAATGGTGCAATG
genomic: TAGAGTTGCCGTgtgagtccat ... ttcattgcagGTATTGTAAATGTGAGATGCCTTACAACCCTGATGACCTAATGGTGCAATG
EST: gi|58022943|gb|CX709684.1|CX709684
EST:     TTTGAGTACAATTCCTCCACCGGCGCCTTCAATCCTGATAGAGTTGCCGT                         GTATTGTAAATGTGAGATGCCTTACAACCCTGATGACCTAATGGTGCAATG
genomic: TTTGAGTACAATTCCTCCACCGGCGCCTTCAATCCTGATAGAGTTGCCGTgtgagtccat ... ttcattgcagGTATTGTAAATGTGAGATGCCTTACAACCCTGATGACCTAATGGTGCAATG
EST: gi|208309370|gb|GE106788.1|GE106788
EST:     TTTGAGTACAATTCCTCCACCGGCGCCTTCAATCCTGATAGAGTTGCCGT                         GTATTGTTAAATGTGAGATGCCTTACAACCCTGATGACCTAATGGTGCAAT
genomic: TTTGAGTACAATTCCTCCACCGGCGCCTTCAATCCTGATAGAGTTGCCGTgtgagtccat ... ttcattgcagGTATTG-TAAATGTGAGATGCCTTACAACCCTGATGACCTAATGGTGCAAT
EST: gi|193325844|gb|FK290283.1|FK290283
EST:     TTTGAGTACAATTCCTCCACCGGCGCCTTCAATCCTGATAGAGTTGCCGT                         GTATTGTAAATGTGAGATGCCTTACAA
genomic: TTTGAGTACAATTCCTCCACCGGCGCCTTCAATCCTGATAGAGTTGCCGTgtgagtccat ... ttcattgcagGTATTGTAAATGTGAGATGCCTTACAA
EST: gi|17401428|gb|BM178210.1|BM178210
EST:     TTTGAGTACAATTCCTCCACCGGCGCCTTCAATCCTGATAGAGTTGCCGT                         GTATTGTAAATGTGAGATGCCTTACAACCCTGATGACCTAATGGTGCAATG
genomic: TTTGAGTACAATTCCTCCACCGGCGCCTTCAATCCTGATAGAGTTGCCGTgtgagtccat ... ttcattgcagGTATTGTAAATGTGAGATGCCTTACAACCCTGATGACCTAATGGTGCAATG