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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCAGAGCAGGAGTGAAGGAGAAAAGGACCCTTGTCCGTCCAGTCCTTATTCTCTTTTCTCCTCCCTCCCTCACGCAACCGCCAATTCCTGAACCCTAAGgtgaattctctctctcctatgtcccaatcacacttcgctcttcgttaatttctaacatttctctgcgttctgaagctag

Basic information

species Glycine max
transcript GLYMA05G37850.3
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192303373|gb|FG997431.1|FG997431
EST:     TCTCTTTTCTCCTCCCTCCCTCACGCAACCGCCAATTCCTGAACCCTAAGCTAG                      
genomic: TCTCTTTTCTCCTCCCTCCCTCACGCAACCGCCAATTCCTGAACCCT-A---AGgtgaattctc ... ctgaagc
EST: gi|20449385|gb|BQ253509.1|BQ253509
EST:     TCTCTTTTCTCCTCCCTCCCTCACGCAACCGCCAATTCCTGAACCCTAAG                         CGCCATGGCTGTCGTTTCGCGAAGTGCGACGACCTATACGCGCCACTACTT
genomic: TCTCTTTTCTCCTCCCTCCCTCACGCAACCGCCAATTCCTGAACCCTAAGgtgaattctc ... ctgaagctagCGCCATGGCTGTCGTTTCGCGAAGTGCGACGACCTATACGCGCCACTACTT
EST: gi|213613811|gb|DB961308.1|DB961308
EST:     TCTCTTTTCTCCTCCCTCCCTCACGCAACCGCCAATTCCTGAACCCTAAGCTAG                      
genomic: TCTCTTTTCTCCTCCCTCCCTCACGCAACCGCCAATTCCTGAACCCT-A---AGgtgaattctc ... ctgaagc
EST: gi|7924868|gb|AW830894.1|AW830894
EST:     TCTCTTTTCTCCTCCCTCCCTCACGCAACCGCCAATTCCTGAACCCTAAG                         CTAGCGCCATGGCTGTCGTTTCGCGAAGTGCGACGACCTATACGCGCCACT
genomic: TCTCTTTTCTCCTCCCTCCCTCACGCAACCGCCAATTCCTGAACCCTAAGgtgaattctc ... ctgaagctagC--GC-C-ATGGCTGTCGTTTCGCGAAGTGCGACGACCTATACGCGCCACT
EST: gi|213590516|gb|DB968094.1|DB968094
EST:     TCTCTTTTCTCCTCCCTCCCTCACGCAACCGCCAATTCCTGAACCCTAAGCTAG                      
genomic: TCTCTTTTCTCCTCCCTCCCTCACGCAACCGCCAATTCCTGAACCCT-A---AGgtgaattctc ... ctgaagc
EST: gi|209707541|gb|BW665000.1|BW665000
EST:     TCTCTTTTCTCCTCCCTCCCTCACGCAACCGCCAATTCCTGAACCCTAAGCTAG                      
genomic: TCTCTTTTCTCCTCCCTCCCTCACGCAACCGCCAATTCCTGAACCCT-A---AGgtgaattctc ... ctgaagc
EST: gi|209718854|gb|BW669041.1|BW669041
EST:     TCTCTTTTCTCCTCCCTCCCTCACGCAACCGCCAATTCCTGAACCCTAAGCTAG                      
genomic: TCTCTTTTCTCCTCCCTCCCTCACGCAACCGCCAATTCCTGAACCCT-A---AGgtgaattctc ... ctgaagc

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCAGAGCAGGAGTGAAGGAGAAAAGGACCCTTGTCCGTCCAGTCCTTATTCTCTTTTCTCCTCCCTCCCTCACGCAACCGCCAATTCCTGAACCCTAAGgtgaattctctctctcctatgtcccaatcacacttcgctcttcgttaatttctaacatttctctgcgttctgaagctag

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