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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATACGCACATTACAATGTGTATGGAAACTTGTTCGAGGTGTCTTCCAAGTATGTGCCTCCTATTCGCCCTATTGGTAGAGGCGTTAATGGCATAGTCTGgttagtgttttatttccttcttcaaatttaaatgcataaatttgatatttgcttggaaatgatttatgttcacttgaacaatgtttctttttag

Basic information

species Glycine max
transcript GLYMA05G37480.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G37480.1 (Glycine max), 5'ss of exon 1
lower sequence: AT4G11330.1 (Arabidopsis thaliana), 5'ss of exon 1
AATACGCACATTACAATGTGTATGGAAACTTGTTCGAGGTGTCTTCCAAGTATGTGCCTCCTATTCGCCCTATTGGTAGAGGCGTTAATGGCATAGTCTGgttagtgttttatttcctt-----cttcaaatttaaatgcataaatttgatatttgc--ttggaaatgatttatgttcacttgaacaatgtttctttttag
 |||    || |||||||| |||||||||||||| || || |||   |||||||| ||||||||||| |||||||||||||| | | | ||  | |||||||     || ||     ||      |||| |||    |   | |  ||  ||||||       || |   | | |  |     |    | |   |||||  
GATATTTTCAATACAATGTTTATGGAAACTTGTTTGAAGTTTCTAATAAGTATGTTCCTCCTATTCGACCTATTGGTAGAGGAGCTTACGGTTTTGTCTGgtacaacttctacccttttgtgtatttcatattcttgtttctta-cttagtatttgtaaccctaattagataaagaactaagtattggtataggtttttga

upper sequence: GLYMA05G37480.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv02s0025g00270.t01 (Vitis vinifera), 5'ss of exon 1
AATACGCACATTACAATGTGTATGGAAACTTGTTCGAGGTGTCTTCCAAGTATGTGCCTCCTATTCGCCCTATTGGTAGAGGCGTTAATGGCATAGTCTGgttagtgttttatttccttcttcaaatttaaatgcataa-atttgatatttgctt-ggaaatgatttatgttcacttgaacaatgtttctttttag-------
  |||| ||  ||||||||||| |||||||| |||||||| ||| | |||||||| ||||| ||||| ||  |||||||||| |   ||||||| ||||||| |||  | |  | |    |||||  |||  | | |   | |   |||    || || | | |||||||     | |     |||| || || |        
GCTACGTACGCTACAATGTGTACGGAAACTTTTTCGAGGTCTCTGCAAAGTATGTTCCTCCGATTCGTCCGGTTGGTAGAGGTGCATATGGCATTGTCTGgtgagt--tattgtactaatttcaaccttatttccgtgttaatcagtatggattttggtatttatttatgggttttcgtgttttgtt-ctgttgacctgcata