Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTACGGAGGCAGAAATTCGACAACTCTGTGTTTCCTCCAAAGAGATCTTTCTCAGTCAACCTAATCTTCTCGAACTCGAGGCTCCTATTAAGATTTGTGgtatatttactcgatatttccgattaattgattaattgtaaccttgcttgttgttttattagttttttgttttgtgctaattgtgaattgtgatgcgtgg...

Basic information

species Glycine max
transcript GLYMA05G37370.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G37370.1 (Glycine max), 5'ss of exon 1
lower sequence: AT4G11240.1 (Arabidopsis thaliana), 5'ss of exon 1
CTTACGGAGGCAGAAATTCGACAACTCTGTGTTTCCTCCAAAGAGATCTTTCTCAGTCAACCTAATCTTCTCGAACTCGAGGCTCCTATTAAGATTTGTGgtatatttactcgata--------tttccgattaattgattaattgtaaccttgcttgttgttttattagttttttgttttgtgctaattgtgaattgtgatgcgtgg
 |||| ||| | || || || || || ||| |  | || |||||| | ||||||||||| |||||||| ||||| |||||||||||||| |||||||| ||||   |||||  |||        ||||    |  ||  || ||  | |  | | || |||| || |  ||||||  |    |    ||| |    ||| |       
ATTACTGAGACGGAGATACGTCAGCTATGTTTAGCTTCAAAAGAGGTTTTTCTCAGTCAGCCTAATCTCCTCGAGCTCGAGGCTCCTATCAAGATTTGCGgtaatgttactgaatagagaaatgtttctctctgtttactttatcttgaattcgttt-ttgtgttgtgggtttttgatcaattttacattttttgatgtaa-------

upper sequence: GLYMA05G37370.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G64040.1 (Arabidopsis thaliana), 5'ss of exon 1
CTTACGGAGGCAGAAATTCGACAACTCTGTGTTTCCTCCAAAGAGATCTTTCTCAGTCAACCTAATCTTCTCGAACTCGAGGCTCCTATTAAGATTTGTGgtatatttactcgatatttccgattaattgattaattgtaaccttgcttgttgttttattagttttttgttttgtgctaattgtgaattgtgatgcgtgg
 | |||||||| || |||  ||| || |||  | || | ||  |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||   | |   |  |||    |    |  | || | |    ||    |  | |||       || |||||  |  |   |   | | | |||   |  
TTGACGGAGGCTGAGATTAAACATCTTTGTTCTACCGCTAAGCAGATCTTTCTCACTCAACCTAATCTTCTTGAACTCGAGGCTCCTATTAAGATTTGTGgtattcattcatcaattttgttctctcctcttcaaattttcttttctacgaggatttgcgtagattatgtttgattatccatagaactagagattgatta

upper sequence: GLYMA05G37370.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S97_286V6.1 (Physcomitrella patens), 5'ss of exon 2
CTTACGGAGGCAGAAATTCGACAACTCTGTGTTTCCTCCAAAGAGATCTTTCTCAGTCAACCTAATCTTCTCGAACTCGAGGCTCCTATTAAGATTTGTGgtatatttactcgatatttccgattaattgattaattgtaacct---tgcttgttgttttattagttt-tttgttttgtgcta-attgtgaattgtgatgcgtgg
||  ||||||| ||||| || || ||||||||| | || || || || ||| |    || |||||||||||||| ||||||||||| |||||||||||||||    || | |   | || |  |   |   | | |      ||     |  || ||  |       | ||||  | || | | || ||  | |  |     |  
CTGTCGGAGGCTGAAATCCGTCAGCTCTGTGTTGCATCGAAGGACATATTTTTGTCCCAGCCTAATCTTCTCGAGCTCGAGGCTCCAATTAAGATTTGTGgt----ttgccctgaacttgcactgcgtccgtcattcaacgtctacacaccagtcgtcgtgacgacatgtttgagtagtacgagatagttgaataggtctttta-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4291226|gb|AI441731.1|AI441731
EST:     TCTCAGTCAACCTAATCTTCTCGAACTCGAGGCTCCTATTAAGATTTGTG                         GAGATGTTCATGGCCAATACTCAGATCTTTTAAGGTTGTTCGAATATGGGG
genomic: TCTCAGTCAACCTAATCTTCTCGAACTCGAGGCTCCTATTAAGATTTGTGgtatatttac ... tcatttgcagGAGATGTTCATGGCCAATACTCAGATCTTTTAAGGTTGTTCGAATATGGGG
EST: gi|4298145|gb|AI442719.1|AI442719
EST:     TCTCAGTCAACCTAATCTTCTCGAACTCGAGGCTCCTATTAAGATTTGTG                         GAGATGTTCATGGCCAATACTCAGATCTTTTAAGGTTGTTCGAATATGGGG
genomic: TCTCAGTCAACCTAATCTTCTCGAACTCGAGGCTCCTATTAAGATTTGTGgtatatttac ... tcatttgcagGAGATGTTCATGGCCAATACTCAGATCTTTTAAGGTTGTTCGAATATGGGG
EST: gi|9203795|gb|BE330019.1|BE330019
EST:     TCTCAGTCAACCTAATCTTCTCGAACTCGAGGCTCCTATTAAGATTTGTG                         GAGATGTTCATGGCCAATACTCAGATCTTTTAAGGTTGTTCGAATATGGGG
genomic: TCTCAGTCAACCTAATCTTCTCGAACTCGAGGCTCCTATTAAGATTTGTGgtatatttac ... tcatttgcagGAGATGTTCATGGCCAATACTCAGATCTTTTAAGGTTGTTCGAATATGGGG