Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACGACGCAGATGTCTCAAAGCAAATCCAGCAGATGGTGCAGTTCATCCGCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGgtttcttcatttcaccattttctcccttttcgtttccaattcatgctctaaacggagtcgcacttttccttctgcag

Basic information

species Glycine max
transcript GLYMA05G37150.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G37150.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g46980.1 (Oryza sativa), 5'ss of exon 1
GAACGACGCAGATGTCTCAAAGCAAATCCAGCAGATGGTGCAGTTCATCCGCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGgt---ttcttcatttcaccattttctc-ccttttcgtttccaattcatgctctaaacggagtcgcacttttc-cttctgcag------------------
||||||||| |||||| | ||||| |||||||||||||||| ||||||||||||||| || ||||| ||||||| ||||||||| ||||||||||| |||||   | |||       || |   ||| ||| | |    |   |  | |||       |  || |  |   | | || | ||                  
GAACGACGCCGATGTCGCCAAGCAGATCCAGCAGATGGTGCGGTTCATCCGCCAGGAGGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGCCGAGGAGgtcagtacttacccctcccctcgcctcgcctctcccccgcgcgtcgaagcttcgggaagcctctcgatccgcgcctccgaagcttttcacccgcccgatc

upper sequence: GLYMA05G37150.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G030167_T01 (Zea mays), 5'ss of exon 1
GAACGACGCAGATGTCTCAAAGCAAATCCAGCAGATGGTGCAGTTCATCCGCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGgtttcttcatttcaccattttctcccttttcgtttccaa---ttc---atgctctaaacggagtcgcacttttccttctgcag-----------------
||| ||||| ||||| || ||||| |||||||||||||||| ||||||||||||||| || || || ||||||||||||||||| ||||||||||| |||||   || |     ||     || |||   | |     |   |||   | |||   |   |  |  | || | |  || || |                 
GAATGACGCCGATGTATCCAAGCAGATCCAGCAGATGGTGCGGTTCATCCGCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttaccctgcctgccgcttcctcaccctcctagaagcttccagaagcttctagatgcttgtctctgtactctcagctgcccgatctggctgacgc

upper sequence: GLYMA05G37150.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G070360_T01 (Zea mays), 5'ss of exon 1
GAACGACGCAGATGTCTCAAAGCAAATCCAGCAGATGGTGCAGTTCATCCGCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGgt------ttcttcatttcaccattttctcccttttcgtttccaattcatgctctaaacggagtcgcacttttccttctgcag-----------------
||| ||||| |||||  | ||||| |||||||||||||||| ||||||||||||||| || || || ||||||||||||||||| ||||||||||| |||||      | ||||  | |  | |  || ||||  | |   |      | || |  |   |  |  | || | | ||| || |                 
GAATGACGCCGATGTAGCCAAGCAGATCCAGCAGATGGTGCGGTTCATCCGCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttccttcgctgccgcttcctcaccctcctagaagcttccagaagcccctagatggttgcctctgtactttcagctgcccgatgtggctggcgc

upper sequence: GLYMA05G37150.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G64200.1 (Arabidopsis thaliana), 5'ss of exon 1
GAACGACGCAGATGTCTCAAAGCAAATCCAGCAGATGGTGCAGTTCATCCGCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGgtttcttcatttcac-cattttctcccttttcgtttcca---------attcatg-ctctaaacggagtcgcacttttccttctgcag------------
||||||||| ||||  || |  || ||||||||||||||   ||| |||||||||||||| || |||||||| |||||||||||  ||||| | ||||| ||   | |||      |||   ||| |||||  | || |         || | || ||||      | | ||     |  ||  |               
GAACGACGCCGATGCTTCCATCCAGATCCAGCAGATGGTTAGGTTTATCCGCCAGGAAGCCGAAGAAAAGGCTAACGAGATCTCCATCTCCTCTGAAGAAgtaagtccatacattacatccactctcttttgatctcgatctttacgaatacgtgactctgttgacaattgcgtgactattttggtttgttcttttgaaa

upper sequence: GLYMA05G37150.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv02s0025g01000.t01 (Vitis vinifera), 5'ss of exon 1
GAACGACGCAGATGTCTCAAAGCAAATCCAGCAGATGGTGCAGTTCATCCGCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGgt----ttcttcatttcaccattt--tctcccttttcgtttccaattcatgctctaaacggagtcgcacttttccttctgcag-----------------
|||||||||||||||||| ||||| |||||||||||||||   ||||||||||| ||||| ||||||||||| || || |||||||| ||||||||||| ||     |  ||| |  |   | |  ||||  |||||  |||  ||   |       | | | | |||           | |                  
GAACGACGCAGATGTCTCCAAGCAGATCCAGCAGATGGTGAGATTCATCCGCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAAgtaagcctactcactcaaatgtgtactctcttttttctcttcggatcgtttggtgctaggaaattgcaagaaaatcagaggaaggaaaaaaaattaaaaa

upper sequence: GLYMA05G37150.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S269_14V6.3 (Physcomitrella patens), 5'ss of exon 1
GAACGACGCAGATGTCTCAAAGCAAATCCAGCAGATGGTGCAGTTCATCCGCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGgtttcttcatt-----tcaccattttctcccttttcgtttccaattcatgctctaaacggagtcgcacttttccttctgcag------------------
|||||||   || ||||| |||||  | |||||| |||||||||| |||||||||||||| ||||| ||||| || ||||| || || || || || |||||   | |||       || | |||| |   ||||  |||    ||  | |  |     |  ||   |  || ||  ||                     
GAACGACTTGGAGGTCTCGAAGCAGGTGCAGCAGTTGGTGCAGTTTATCCGCCAGGAAGCGGAGGAGAAGGCTAATGAGATTTCAGTTTCGGCTGAGGAGgtacttccatcacgtcccagccttttttttttttttttttttttttttttcgtttttttgtttcctgcagtttctcttgtgatgaggcactcgtcaatca

upper sequence: GLYMA05G37150.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S269_15V6.1 (Physcomitrella patens), 5'ss of exon 1
GAACGACGCAGATGTCTCAAAGCAAATCCAGCAGATGGTGCAGTTCATCCGCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGgtttcttcatttcaccattt----tctcccttttcgtttccaattcatgctctaaacggagtcgcacttttccttctgcag---------------------
|||||||   || || ||  ||||| |||||||||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||| || ||||| |||||     |||    |   ||     | ||     ||||| ||| |  |  | ||   |||||   |  | |  |   | |                      
GAACGACATGGAGGTTTCGCAGCAAGTCCAGCAGATGGTGCAGTTCATACGCCAGGAAGCGGAGGAGAAGGCCAATGAGATCTCTGTATCTGCCGAGGAGgtaagaccatcaggctccttgaatccaccgggcacgtttgcaaatgtttttatagg-ggagtt-tatctgttttggagaattcggacctcgaatcgacgttg

upper sequence: GLYMA05G37150.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S68_127V6.1 (Physcomitrella patens), 5'ss of exon 1
GAACGACGCAGATGTCTCAAAGCAAATCCAGCAGATGGTGCAGTTCATCCGCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGgtttcttcatttcaccattttctcccttttcgtttccaattcatgctctaaacggagtcgcacttttcct---tctgcag------------------------
|||||||   || || || |||||  |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| || || ||||||||      | |||   |   | |||||| | |||||       |    | |  ||  || |  || |      |||| |                         
GAACGACATTGAGGTTTCGAAGCAGGTCCAGCAGATGGTGCAGTTCATCCGCCAGGAAGCAGAGGAGAAGGCCAACGAGATCTCTGTATCTGCTGAAGAGgtga----agttctttacaatgtcccttgtggtttcaggcgattctgttgaggggtttctctattgtgaagaatctgaatgtcgagttaaaaatcttataggtt

upper sequence: GLYMA05G37150.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ17636 (Selaginella moellendorffii), 5'ss of exon 1
GAACGACGCAGATGTCTCAAAGCAAATCCAGCAGATGGTGCAGTTCATCCGCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGgtttcttcatttcaccattttctcccttttcgtttccaattcatgctctaaacgga---gtcgcacttttccttctgcag--------------------
|||||| || || ||| | |||||  ||  ||||||||||   ||||||||||||||||| ||||| || |||||||||||||| |||||||| ||||||||    |  | |   | |  ||| | || | |  |   | | |     || | |||    | |    |||||||| |  |                    
GAACGATGCCGAGGTCGCCAAGCAGGTCGCGCAGATGGTGAGATTCATCCGCCAGGAAGCCGAGGAGAAAGCCAACGAGATCTCGGTCTCCGCAGAAGAGgtaaggttttcttctcctcctcttctttgtagacttggaataaattgatagatggatggatgggttctttccttcggtggagctgacattggatttccag

upper sequence: GLYMA05G37150.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ29103 (Selaginella moellendorffii), 5'ss of exon 1
GAACGACGCAGATGTCTCAAAGCAAATCCAGCAGATGGTGCAGTTCATCCGCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGgtttcttcatttcaccattttctcccttttcgtttccaattcatgctctaaacgga---gtcgcacttttccttctgcag--------------------
|||||| || || ||| | |||||  ||  ||||||||||   ||||||||||||||||| ||||| || |||||||||||||| |||||||| ||||||||    |  | |   | |  ||| | || | |  |   | | |     || | |||    | |    ||||||||||  |                    
GAACGATGCCGAGGTCGCCAAGCAGGTCGCGCAGATGGTGAGATTCATCCGCCAGGAAGCCGAGGAGAAAGCCAACGAGATCTCGGTCTCCGCGGAAGAGgtaaggttttcttctcctcctcttctttgtagacttagaataaattgatagatggatggatgggttctttccttctgtggagctgacattggatttccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208147496|gb|GD951505.1|GD951505
EST:     GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTT
genomic: GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGgtttcttcat ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTT
EST: gi|207807470|gb|GD777105.1|GD777105
EST:     GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGA
genomic: GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGgtttcttcat ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGA
EST: gi|19054071|gb|BM732738.1|BM732738
EST:     GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGgtttcttcat ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
EST: gi|208061506|gb|GD860466.1|GD860466
EST:     GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAG                         GAATTCAATNTCGAGAAGCTGCAGTTGGTCGAAGCCGACAAG
genomic: GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGgtttcttcat ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAG
EST: gi|207740534|gb|GD713800.1|GD713800
EST:     CAGGAAGCTGAGGAAAAGGACCAAACGAGATCTCTGTCTCCGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
genomic: CAGGAAGCTGAGGAAAAGG-CCAA-CGAGATCTCTGTCTCCGCCGAAGAGgtttcttcat ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
EST: gi|298186732|gb|HO037365.1|HO037365
EST:     GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGgtttcttcat ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
EST: gi|193533656|gb|FK489413.1|FK489413
EST:     GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGNTC
genomic: GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGgtttcttcat ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
EST: gi|193594639|gb|FK546274.1|FK546274
EST:     GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGgtttcttcat ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
EST: gi|193547256|gb|FK502817.1|FK502817
EST:     GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGgtttcttcat ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
EST: gi|16346919|gb|BI972514.1|BI972514
EST:     GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGgtttcttcat ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
EST: gi|19052822|gb|BM731489.1|BM731489
EST:     GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGgtttcttcat ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
EST: gi|9204105|gb|BE330329.1|BE330329
EST:     GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGgtttcttcat ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
EST: gi|193410823|gb|FK375928.1|FK375928
EST:     GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGgtttcttcat ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
EST: gi|9204646|gb|BE330870.1|BE330870
EST:     GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGgtttcttcat ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
EST: gi|193331725|gb|FK295019.1|FK295019
EST:     GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGgtttcttcat ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
EST: gi|193323818|gb|FK289998.1|FK289998
EST:     GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCCCTGTCTCCGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAG
genomic: GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGgtttcttcat ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAG
EST: gi|151409500|gb|EV279308.1|EV279308
EST:     TCTGTCTCCGCCGAAGAG                         GAATTCAATATCGAGAAGCTACAGTTGGTCGAAGCCGACAAGAAGAAGACC
genomic: TCTGTCTCCGCCGAAGAGgtttcttcat ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
EST: gi|19270286|gb|BM886542.1|BM886542
EST:     GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGgtttcttcat ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
EST: gi|151401846|gb|EV271659.1|EV271659
EST:     GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCTGACAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGgtttcttcat ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
EST: gi|207719249|gb|GD699982.1|GD699982
EST:     GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAG
genomic: GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGgtttcttcat ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAG
EST: gi|207735449|gb|GD710292.1|GD710292
EST:     GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAG                         GAATTCAATATCGAGAAG
genomic: GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGgtttcttcat ... ccttctgcagGAATTCAATATCGAGAAG
EST: gi|193344919|gb|FK310453.1|FK310453
EST:     GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGgtttcttcat ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
EST: gi|8826403|gb|BE210133.1|BE210133
EST:     GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGgtttcttcat ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
EST: gi|4313631|gb|AI460750.1|AI460750
EST:     GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGgtttcttcat ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
EST: gi|7285006|gb|AW597493.1|AW597493
EST:     GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGgtttcttcat ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
EST: gi|6913767|gb|AW395297.1|AW395297
EST:     GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGgtttcttcat ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
EST: gi|5687988|gb|AI941003.1|AI941003
EST:     GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGgtttcttcat ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
EST: gi|193358640|gb|FK324552.1|FK324552
EST:     GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGgtttcttcat ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
EST: gi|208193689|gb|GD993344.1|GD993344
EST:     GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCG
genomic: GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGgtttcttcat ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCG
EST: gi|8827226|gb|BE210956.1|BE210956
EST:     GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGgtttcttcat ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
EST: gi|19937915|gb|BQ081474.1|BQ081474
EST:     GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGgtttcttcat ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
EST: gi|193429811|gb|FK392827.1|FK392827
EST:     GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGgtttcttcat ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
EST: gi|193422612|gb|FK387649.1|FK387649
EST:     GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTCGAANCCGACAAGAAGAAG
genomic: GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGgtttcttcat ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAG
EST: gi|151400393|gb|EV270207.1|EV270207
EST:     GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGACC
genomic: GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGgtttcttcat ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
EST: gi|192322756|gb|FK014447.1|FK014447
EST:     GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGgtttcttcat ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAACGACGCAGATGTCTCAAAGCAAATCCAGCAGATGGTGCAGTTCATCCGCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGgtttcttcatttcaccattttctcccttttcgtttccaattcatgctctaaacggagtcgcacttttccttctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA