1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CCACCATCAGAGTCTCTTCCTAGGGATGAAACCATTGGAGGCTATATCTTTGTTTGCAACAATGATACCATGGCTGAGAATCTCAAGAGACAACTCTTCGgtatgttccttaatttccttgttgagactcaattatgcaattgttatatcttattgatacaatatacttcaggttttttaatttcctagtcatacactgg...
species | Glycine max |
transcript | GLYMA05G36700.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGAATCTCAAGAGACAACTCTTCG GTCTGCCTCCACGATACAGAGATTCTGTTCGGGCCATTACTCCGGGGTTGCEST: gi|254315467|gb|GR825276.1|GR825276
genomic: AGAATCTCAAGAGACAACTCTTCGgtatgttcct ... gtgtttttagGTCTGCCTCCACGATACAGAGATTCTGTTCGGGCCATTACTCCGGGGTTGC
EST: TGTTTGCAACAATGATACCATGGCTGAGAATCTCAAGAGACAACTCTTCG GTCTGCCTCCACGATACAGAGATTCTGTTCGGGCCATTACTCCGGGGTTGCEST: gi|6454117|gb|AW184865.1|AW184865
genomic: TGTTTGCAACAATGATACCATGGCTGAGAATCTCAAGAGACAACTCTTCGgtatgttcct ... gtgtttttagGTCTGCCTCCACGATACAGAGATTCTGTTCGGGCCATTACTCCGGGGTTGC
EST: TGTTTGCAACAATGATACCATGGCTGAGAATCTCAAGAGACAACTCTTCG GTCTGCCTCCACGATACAGAGATTCTGTTCGGGCCATTACTCCGGGGTTGCEST: gi|5760821|gb|AI966184.1|AI966184
genomic: TGTTTGCAACAATGATACCATGGCTGAGAATCTCAAGAGACAACTCTTCGgtatgttcct ... gtgtttttagGTCTGCCTCCACGATACAGAGATTCTGTTCGGGCCATTACTCCGGGGTTGC
EST: TGTTTGCAACAATGATACCATGGCTGAGAATCTCAAGAGACAACTCTTCG GTCTGCCTCCACGATACAGAGATTCTGTTCGGGCCATTACTCCGGGGTTGC
genomic: TGTTTGCAACAATGATACCATGGCTGAGAATCTCAAGAGACAACTCTTCGgtatgttcct ... gtgtttttagGTCTGCCTCCACGATACAGAGATTCTGTTCGGGCCATTACTCCGGGGTTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCACCATCAGAGTCTCTTCCTAGGGATGAAACCATTGGAGGCTATATCTTTGTTTGCAACAATGATACCATGGCTGAGAATCTCAAGAGACAACTCTTCGgtatgttccttaatttccttgttgagactcaattatgcaattgttatatcttattgatacaatatacttcaggttttttaatttcctagtcatacactgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA