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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGTTTCCACGTGGAGCTGATGCATACATTGACGACATTAATGAGCTTATTCCCCTCACAAGTGGTACTATCAGAACTGCAATTGATACTGGCTGTGGTgtaagttaatctatattctatcctcatttatctctatgcctctatttattttttgagttttacactatcaacctattagaaatcatgttagattagataa...

Basic information

species Glycine max
transcript GLYMA05G36550.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G36550.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G33170.1 (Arabidopsis thaliana), 5'ss of exon 1
AATGTTTCCACGTGGAGCTGATGCATACATTGACGACATTAATGAGCTTATTCCCCTCACAAGTGGTACTATCAGAACTGCAATTGATACTGGCTGTGGTgtaagtt---aatctatatt-ctatcctcatttatctctatgcctct---atttattttttga--gttttacactatcaacctattaga--aatcatgtta---gattagataa---------------------------------------------------------------------------
|||||||||||||||||||||||| |||||||| || |||  |   || ||||| || ||   |||  | || ||||| || |||||||| || |||||||||||||   | |   | || | ||  | || |   |||||   |||   |||| |||||| |  ||| |    | | |   ||||     ||| |    |   |||||  | |                                                                           
AATGTTTCCACGTGGAGCTGATGCTTACATTGATGATATTGCTAGACTCATTCCTCTTACTGATGGAGCCATTAGAACAGCTATTGATACAGGATGTGGTgtaagtttcgatttcttgttaccatttttatatgcatctatctatctttgatttgttttttaatagttctgttttcttagtttatttttttaattacaacaaatgattatgttaaaatacgacttcttgattggttaccaaatcggaaggataatagtttaattaattcggtatcatttggttgtttag

upper sequence: GLYMA05G36550.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv02s0025g03200.t01 (Vitis vinifera), 5'ss of exon 1
AATGTTTCCACGTGGAGCTGATGCATACATTGACGACATTAATGAGCTTATTCCCCTCACAAGTGGTACTATCAGAACTGCAATTGATACTGGCTGTGGTgtaagttaa--tctatattctatcctcattta---tctctatgcctctatttattttttgagttttacactatcaaccta----ttagaaatcatgttagattagataa------
 ||||| ||||||||||||||||| || ||||| ||||| || ||||| ||||| || ||  | || || ||||| |||||||||||||| ||||||||||||||| ||    |  | ||  |   ||||||     |||||    | |||  ||| | |  | || || || | | |       |   | |  |  | |||| | |        
CATGTTCCCACGTGGAGCTGATGCTTATATTGATGACATAAACGAGCTCATTCCTCTTACTGGCGGCACCATCAGGACTGCAATTGATACAGGCTGTGGTgtaagtaaaggcttcaactccttgtccatttaggccttctatattaccattgttttgtagtttattgcagtagctaacaggagtctcctactgtttcttgattgggtgtgttaag