1 5' 3' |
AGCAATTGCTGGAACAGAACAAGCAACACATTCAGGAGCCTCCTACAGTAGAGAAATGCAACCTGTTGGCAAAGCAATTGTTTTACACTCGCCTTGCTAGgttatatattgtccaactcacccctcccccccaaataatgttttgtctggctggattcaccatatgaaatttgctaattgaatatttgtatatgcttgtt...
species | Glycine max |
transcript | GLYMA05G36240.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAGAAATGCAACCTGTTGGCAAAGCAATTGTTTTACACTCGCCTTGCTAG TATTCCGAGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGCCAAGAAEST: gi|207706412|gb|GD687030.1|GD687030
genomic: GAGAAATGCAACCTGTTGGCAAAGCAATTGTTTTACACTCGCCTTGCTAGgttatatatt ... tcttttgcagTATTCCGAGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGCCAAGAA
EST: GAGAAATGCAACCTGTTGGCAAAGCAATTGTTTTACACTCGCCTTGCTAG TATTCCGAGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGCCAAGAAEST: gi|193712178|gb|FK652659.1|FK652659
genomic: GAGAAATGCAACCTGTTGGCAAAGCAATTGTTTTACACTCGCCTTGCTAGgttatatatt ... tcttttgcagTATTCCGAGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGCCAAGAA
EST: GAGAAATGCAACCTGTTGGCAAAGCAATTGTTTTACACTCGCCTTGCTAG TATTCCGAGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGCCAAGAA
genomic: GAGAAATGCAACCTGTTGGCAAAGCAATTGTTTTACACTCGCCTTGCTAGgttatatatt ... tcttttgcagTATTCCGAGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGCCAAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCAATTGCTGGAACAGAACAAGCAACACATTCAGGAGCCTCCTACAGTAGAGAAATGCAACCTGTTGGCAAAGCAATTGTTTTACACTCGCCTTGCTAGgttatatattgtccaactcacccctcccccccaaataatgttttgtctggctggattcaccatatgaaatttgctaattgaatatttgtatatgcttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcaccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccccc