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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCGCTATGGCCGAAGAATTTGTGAAGGGCACTGTTCATCAAAACGGCGTCGCTGTCATCACCCTCGATCGCCCCAAAGCTCTCAACGCCATGAACCTAGgtttttcattttcttcttcttttccataattatgcatgctattaagttgagaattgtgttcggagattttcttttggaatctggactgtttagttgaact...

Basic information

species Glycine max
transcript GLYMA05G35260.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G35260.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os06g39344.3 (Oryza sativa), 5'ss of exon 1
TCCGCTATGGCCGAAGAATTTGTGAAGGGCACTGTTCATCAAAACGGCGTCGCTGTCATCACCCTCGATCGCCCCAAAGCTCTCAACGCCATGAACCTAGgt----ttttcattttcttcttcttttccataattatgcatgctattaagttgagaattgtgttcggagattttcttttggaatctggactgtttagttgaact
 ||||    || || || || |||||||||   ||    |  ||||||||||| |||||||||||||| |||||||| || ||||||||||||||||| |||     |  |   |   |||   | ||  |   | |   |     |   |      |  |  ||  |  |    |  ||| |   || |      |  |    
GCCGCCGCCGCGGAGGAGTTCGTGAAGGGCCGCGTCACCCCCAACGGCGTCGCCGTCATCACCCTCGACCGCCCCAAGGCCCTCAACGCCATGAACCTCGgtgagggtcgctcctctctctctctctctctctctctctctctctctctctctctcttcctcctcctatttgggttactgggagtagggcgaccgggccg----

upper sequence: GLYMA05G35260.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G047564_T01 (Zea mays), 5'ss of exon 1
TCCGCTATGGCCGAAGAATTTGTGAAGGGCACTGTTCATCAAAACGGCGTCGCTGTCATCACCCTCGATCGCCCCAAAGCTCTCAACGCCATGAACCTAGgtttttcattttcttcttcttttccataat-tatgcatgctattaagttgagaattgtgttcggagattttcttttggaatctggactgtttagttgaact
 || |    || || || || |||||||||   ||    |  ||||||||||| |||||||| ||||| || ||||| || ||||||||||||||||| |||          || |  || ||   | |  |  |    |  |   |    | ||     |     |  ||  |  || |  |         |  |  || 
GCCACCGCCGCAGACGAGTTCGTGAAGGGCCGCGTCTTCCCCAACGGCGTCGCCGTCATCACGCTCGACCGACCCAAGGCCCTCAACGCCATGAACCTCGgtgaggatggacctccagctcttatttgacctccgaggaccctctggccagggatctcaataaataaacttagtcgggtacttttttccgcaatctatac-

upper sequence: GLYMA05G35260.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv11s0016g04290.t01 (Vitis vinifera), 5'ss of exon 1
TCCGCTATGGCCGAAGAATTTGTGAAGGGCACTGTTCATCAAAACGGCGTCGCTGTCATCACCCTCGATCGCCCCAAAGCTCTCAACGCCATGAACCTAGgttt------ttcattttcttcttcttttccataattatgcatgctattaagttgagaattgtgttcggagattttcttttggaatctggactgtttagttgaact
 | |||   || || |||||||| ||||| | |||||||| ||| ||||| ||||| || || || ||||||||||| |||||||| || ||||||||||||||       |||| || | ||| ||     |  | | |||    |||   | |    |||  || |||   || | ||||  |||  |  |   | | ||||  
GCTGCTGCTGCTGAGGAATTTGTCAAGGGAAATGTTCATCCAAATGGCGTTGCTGTGATAACTCTTGATCGCCCCAAGGCTCTCAATGCTATGAACCTAGgtttggttttctcatgttttccttgttccatctcttaaagcacatcatttgttcgtt--ttggattaggatgattgcatttg--atcgagtgttcgttgctgaa--