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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTCTCTTCTTCGAAGGCCAGCGCTCCGGCAAACTCCCCGCCGACCAGCGCCTCCGCTGGCGCCACGACTCTGCATTGCACGACGGCGCCACCGCCGGAgtaagtttttctgttttgttctgaaagggtaataggtagagaaaatgatgattaatgaggttggtacattgtgtttttttctcag

Basic information

species Glycine max
transcript GLYMA05G34850.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G34850.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os06g14540.1 (Oryza sativa), 5'ss of exon 1
CATTCTCTTCTTCGAAGGCCAGCGCTCCGGCAAACTCCCCGCCGACCAGCGCCTCCGCTGGCGCCACGACTCTGCATTGCACGACGGCGCCACCGCCGGAgtaagt----------ttttctgttttgttctgaaagggtaataggtagagaaaatgatg-attaatgaggttggt-acattg-tgtttttttctcag--------------------------
||| || |||||||| |||||||||||||||   || ||  ||||||||||||||||||||||||  ||||| ||  |  ||||||||||||||||||| ||| |            | ||| | |   ||||     | | ||  |   |      ||| | || | | | ||   |  | | ||    |||||  |                          
CATCCTGTTCTTCGAGGGCCAGCGCTCCGGCCGCCTGCCACCCGACCAGCGCCTCCGCTGGCGCCGTGACTCCGCCCTCAACGACGGCGCCACCGCCGGCgtacggaccaccaccgctctctctctctctctgttctagcattaa-tgcggtttgcaatgtagtagtaatgatgacgatgtcgctgacggtttcttggaatggtggcgtggcgtggcgtggcag

upper sequence: GLYMA05G34850.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os02g50040.1 (Oryza sativa), 5'ss of exon 1
CATTCTCTTCTTCGAAGGCCAGCGCTCCGGCAAACTCCCCGCCGACCAGCGCCTCCGCTGGCGCCACGACTCTGCATTGCACGACGGCGCCACCGCCGGAgtaagtttttctgttttgtt--------ctgaaagggtaata--ggtagag-aaaatgatgattaatgaggttggtacattgtgtttttttctcag
||| || ||||| || || |||||||||||||  || ||  |||||||||| ||||||||||||| |||||| |   | |||||||||||| ||||| | ||| || ||   ||  | |          | | |  ||| ||  |||  || |  ||  |||||  ||||  |       ||||      | |   
CATACTGTTCTTTGAGGGACAGCGCTCCGGCAGGCTTCCTCCCGACCAGCGTCTCCGCTGGCGCCGCGACTCCGGCCTCCACGACGGCGCCGCCGCCAGCgtacgtattctcgtcctataacttggcgttaagaatgtactactggtgaagcagcattgtgatttgtgag--taacctgctgtggccgcgtgtag-

upper sequence: GLYMA05G34850.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G076049_T01 (Zea mays), 5'ss of exon 1
CATTCTCTTCTTCGAAGGCCAGCGCTCCGGCAAACTCCCCGCCGACCAGCGCCTCCGCTGGCGCCACGACTCTGCATTGCACGACGGCGCCACCGCCGGAgtaagtttttctgttttgttc---tgaaagggtaataggtagagaaaa-tgatgattaatgaggt-----tggtacat----tgtgtttttttctcag------------------------
||| ||||||||||| || |||||||| || |  |||||  | |||||||||||||||||||||| |||||| |   | |||||||||||| | ||||| ||| ||    |      || |   | | |    | |   || ||     |  ||    ||   ||     ||   ||     |||||     |  | |                        
CATCCTCTTCTTCGAGGGGCAGCGCTCGGGGAGGCTCCCGCCGGACCAGCGCCTCCGCTGGCGCCGCGACTCCGGCCTCCACGACGGCGCCGCGGCCGGGgtacgtgcaccgacccagtccgactaataaatcactctctatagttgccttttggcctatagagtaccgttgaagcaagacatgtgtgagcattaccgcgccatttggtcgtcgcgtaacag