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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCGCTAGGGTCCCCAAGAAGGTCTTGCAGTTCGCTGGAATCGATGACGTCTTCACTTCCTCCAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAGgttgttaacttctcttattcttataatcatttaatgtctttcttttgtttaattgattgtctgatatagcttcattatcgtggtttataataagttatca...

Basic information

species Glycine max
transcript GLYMA05G34570.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G34570.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv08s0007g08370.t01 (Vitis vinifera), 5'ss of exon 1
CGCCGCTAGGGTCCCCAAGAAGGTCTTGCAGTTCGCTGGAATCGATGACGTCTTCACTTCCTCCAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAGgtt--gttaacttctcttattcttataatcattta-atgtctttc-----ttttgtttaattgattgtctgatatagcttcattatcgtggtttataataagttatca
 ||||||||||| || |||||||| |||||||| ||||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||   |  | |||| |   |  | |  | ||||  || |  |||     | ||  |   || ||  || ||| ||  || |||   |||  |||   |         
GGCCGCTAGGGTTCCAAAGAAGGTTTTGCAGTTTGCTGGAATCGAGGACGTGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatctatttctttgtctgctttgttgatttggatttgattcgaaaatgtttctacgtttatcttcagatttaagtttatttgagtgaattaatctc--------

upper sequence: GLYMA05G34570.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S411_32V6.1 (Physcomitrella patens), 5'ss of exon 1
CGCCGCTAGGGTCCCCAAGAAGGTCTTGCAGTTCGCTGGAATCGATGACGTCTTCACTTCCTCCAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAGgttgttaacttctcttattcttata-atcatttaatgtctttcttttgt-ttaattgattgtctgatatagcttcattatcgtggtttataataagttatca-
 |||||  | || |||||||||||| | |||||||| || || || || || |||||||| ||  | || ||||||||||| || ||||||||||| |||||   || ||     | | ||| || |    | || ||  ||  || |   || |  |   |   |    | || ||   || |  ||||   |   ||| | 
AGCCGCCCGAGTGCCCAAGAAGGTCCTCCAGTTCGCCGGTATTGAAGATGTATTCACTTCATCACGCGGCTCCACCAAAACTCTTGGAAATTTCGTTAAGgtgtgtacctctgtctctccttttagagtcgtaaaggtgattaattcgcgctagtccaaatttcta---gggtttatcgacgggtcttatgggattgtattaa

upper sequence: GLYMA05G34570.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S274_5V6.1 (Physcomitrella patens), 5'ss of exon 1
CGCCGCTAGGGTCCCCAAGAAGGTCTTGCAGTTCGCTGGAATCGATGACGTCTTCACTTCCTCCAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAGgttgttaacttctcttattcttataatcatttaatgtctttc---ttttgtttaattgattgtctgatatagcttcattatcgtggtttataataagttatca
 || ||| | || ||||| ||||||||||| ||||| || || || ||||| ||||| |||||  | || || || |||||||| ||||| |||||||||||    |     |  |  |   | |||    ||    | |     |||  ||   ||  |||| |  | | | ||  || | ||| ||| |  |   || |  
GGCTGCTCGTGTGCCCAAAAAGGTCTTGCAATTCGCCGGTATTGAAGACGTGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgggtttctcgttacacaatgccatagaaccctgtcaatttcattgttttttttgttttgttttgttttgtt-ttgtgtttttttgttttttct--

upper sequence: GLYMA05G34570.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S400_15V6.1 (Physcomitrella patens), 5'ss of exon 1
CGCCGCTAGGGTCCCCAAGAAGGTCTTGCAGTTCGCTGGAATCGATGACGTCTTCACTTCCTCCAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAGgttgttaacttctcttatt-cttataatcatttaatgtctttcttttgtttaattgattgtctgatatagcttcattatcgtggtttataataagttatca---
||| ||  | || ||||||||||| ||||||||||| || || || || || ||||| || ||| | || |||||||| |||||||| |||||||| |||||    || ||  ||||   | | | ||  ||   |||   | |  |||   ||| | |      ||  | |||   ||   |   |  |||  ||  |     
CGCTGCACGCGTGCCCAAGAAGGTTTTGCAGTTCGCCGGTATTGAGGATGTTTTCACCTCTTCCCGCGGATCCACCAAGACCCTCGGTAATTTCGTGAAGgtgagcaaatttgcttagggcgtgtgatgcttgtgtgttaatgtactgt---attaaatcctgattagggtttctcgattcggaactgaaatt-gtcctagtct

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58022024|gb|CX708765.1|CX708765
EST:     TCTTCACTTCCTCCAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACTTTTGACTGTTTGCTGAAAACCTACGGTTTTCTAACACCTGAATTC
genomic: TCTTCACTTCCTCCAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAGgttgttaact ... gtttttacagGCTACTTTTGACTGTTTGCTGAAAACCTACGGTTTTCTAACACCTGAATTC
EST: gi|10234053|gb|BE802941.1|BE802941
EST:     TCTTCACTTCCTCCAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACTTTTGACTGTATGCTGAAAACCTACGGTTNTCTAACACCTGAATTC
genomic: TCTTCACTTCCTCCAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAGgttgttaact ... gtttttacagGCTACTTTTGACTGTTTGCTGAAAACCTACGGTTTTCTAACACCTGAATTC
EST: gi|58015153|gb|CX701895.1|CX701895
EST:     TCTTCACTTCCTCCAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACTTTTGACTGTTTGCTGAAAACCTACGGTTTTCTAACACCTGAATTC
genomic: TCTTCACTTCCTCCAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAGgttgttaact ... gtttttacagGCTACTTTTGACTGTTTGCTGAAAACCTACGGTTTTCTAACACCTGAATTC
EST: gi|58025439|gb|CX712180.1|CX712180
EST:     TCTTCACTTCCTCCAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACTTTTGACTGTTTGCTGAAAACCTACGGTTTTCTAACACCTGAATTC
genomic: TCTTCACTTCCTCCAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAGgttgttaact ... gtttttacagGCTACTTTTGACTGTTTGCTGAAAACCTACGGTTTTCTAACACCTGAATTC
EST: gi|11273939|gb|BF324327.1|BF324327
EST:     TCTTCACTTCCTCCAGGGGTTCCACCANAACCCTCGGAAATNTCGTCAAG                         GCTACTTTTGACTGTTTGCTGAAAACCTACGGTTTTCTAACACCTGAATTC
genomic: TCTTCACTTCCTCCAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAGgttgttaact ... gtttttacagGCTACTTTTGACTGTTTGCTGAAAACCTACGGTTTTCTAACACCTGAATTC
EST: gi|12774140|gb|BG239067.1|BG239067
EST:     TCTTCACTTCCTCCAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACTTTTGACTGTTTGCTGAAAACCTACGGTTTTCTAACACCTGAATTC
genomic: TCTTCACTTCCTCCAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAGgttgttaact ... gtttttacagGCTACTTTTGACTGTTTGCTGAAAACCTACGGTTTTCTAACACCTGAATTC
EST: gi|20449489|gb|BQ253613.1|BQ253613
EST:     TCTTCACTTCCTCCAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACTTTTGACTGGTTGCTGAAAAC-TACGGTTTTC
genomic: TCTTCACTTCCTCCAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAGgttgttaact ... gtttttacagGCTACTTTTGACTGTTTGCTGAAAACCTACGGTTTTC
EST: gi|15812495|gb|BI784770.1|BI784770
EST:     GTTCCACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACTTTTGACTGTTTGCTGAAAACCTACGGTTTTCTAACACCTGAATTC
genomic: GTTCCACCAAAACCCTCGGAAATTTCGTCAAGgttgttaact ... gtttttacagGCTACTTTTGACTGTTTGCTGAAAACCTACGGTTTTCTAACACCTGAATTC
EST: gi|31466087|gb|CD408115.1|CD408115
EST:     TCTTCACTTCCTCCAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACTTTTGACTGTTTGCTGAAAACCTACGGTTTTCTAACACCTGAATTC
genomic: TCTTCACTTCCTCCAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAGgttgttaact ... gtttttacagGCTACTTTTGACTGTTTGCTGAAAACCTACGGTTTTCTAACACCTGAATTC
EST: gi|6912807|gb|AW394291.1|AW394291
EST:     TCTTCACTTCCTCCAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACTTTTGACTGTTTGCTGAAAACCTACGGTTTTCTAACACCTGAATTC
genomic: TCTTCACTTCCTCCAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAGgttgttaact ... gtttttacagGCTACTTTTGACTGTTTGCTGAAAACCTACGGTTTTCTAACACCTGAATTC
EST: gi|6072906|gb|AW102293.1|AW102293
EST:     CACCAAAACCCTCTGAAATTTCGTCAAG                         GCTACTTTTGACTGTTTGCTGAAAACCTACGGTTTTCTAACACCTGAATTC
genomic: CACCAAAACCCTCGGAAATTTCGTCAAGgttgttaact ... gtttttacagGCTACTTTTGACTGTTTGCTGAAAACCTACGGTTTTCTAACACCTGAATTC
EST: gi|31466417|gb|CD408445.1|CD408445
EST:     TCTTCACTGCCTCCAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACTTTTGACTGTTTGCTGAAAACCTACGGTTTTCTAACACCTGAATTC
genomic: TCTTCACTTCCTCCAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAGgttgttaact ... gtttttacagGCTACTTTTGACTGTTTGCTGAAAACCTACGGTTTTCTAACACCTGAATTC
EST: gi|31307363|gb|CD392566.1|CD392566
EST:     TCTTCACTTCCTCCAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACTTTTGACTGTTTGCTGAAAACCTACGGTTTTCTAACACCTGAATTC
genomic: TCTTCACTTCCTCCAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAGgttgttaact ... gtttttacagGCTACTTTTGACTGTTTGCTGAAAACCTACGGTTTTCTAACACCTGAATTC
EST: gi|58017154|gb|CX703896.1|CX703896
EST:     TCTTCACTTCCTCCAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACTTTTGACTGTTTGCTGAAAACCTACGGTTTTCTAACACCTGAATTC
genomic: TCTTCACTTCCTCCAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAGgttgttaact ... gtttttacagGCTACTTTTGACTGTTTGCTGAAAACCTACGGTTTTCTAACACCTGAATTC
EST: gi|4313612|gb|AI460731.1|AI460731
EST:     TCTTCACTTCCTCCAGGGGTTCCACCAAAACCCTCGGAAATNTCGTCAAG                         GCTACTTTTGACTGTTTGCTGAAAACCTACGGTTNTCTAACACCTGAATTC
genomic: TCTTCACTTCCTCCAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAGgttgttaact ... gtttttacagGCTACTTTTGACTGTTTGCTGAAAACCTACGGTTTTCTAACACCTGAATTC
EST: gi|31469619|gb|CD411647.1|CD411647
EST:     TCTTCACTTCCTCCAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACTTTTGACTGTTTGCTGAAAACCTACGGTTTTCTAACACCTGAATTC
genomic: TCTTCACTTCCTCCAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAGgttgttaact ... gtttttacagGCTACTTTTGACTGTTTGCTGAAAACCTACGGTTTTCTAACACCTGAATTC
EST: gi|58017600|gb|CX704342.1|CX704342
EST:     TCTTCACTTCCTCCAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACTTTTGACTGTTTGCTGAAAACCTACGGTTTTCTAACACCTGAATTC
genomic: TCTTCACTTCCTCCAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAGgttgttaact ... gtttttacagGCTACTTTTGACTGTTTGCTGAAAACCTACGGTTTTCTAACACCTGAATTC