1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CCTAGAGCACCCTGTCAAAGCTGATGGCTCACTTAGCCTTATGGTCATTGGAGACTGGGGAAGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAGgtcttcatcctctatttagtgggaacttgtgttccagtattagtctagtagtctacttaactaagcacaagtttacaataattttttaattacgatacag...
species | Glycine max |
transcript | GLYMA05G33640.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAGACTGGGGAAGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAG ATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTGTGATATCCACTGGAEST: gi|151396212|gb|EV266089.1|EV266089
genomic: GAGACTGGGGAAGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAGgtcttcatcc ... tgtatgtcagATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTGTGATATCCACTGGA
EST: GAGACTGGGGAAGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAG ATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTGTGATATCCACTGGAEST: gi|18848901|gb|BM568011.1|BM568011
genomic: GAGACTGGGGAAGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAGgtcttcatcc ... tgtatgtcagATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTGTGATATCCACTGGA
EST: GAGACTGGGGAAGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAG ATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTGTGATATCCACTGGAEST: gi|208334648|gb|GE126671.1|GE126671
genomic: GAGACTGGGGAAGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAGgtcttcatcc ... tgtatgtcagATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTGTGATATCCACTGGA
EST: GAGACTGGGGAAGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAG ATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTGTGATATCCACTGGAEST: gi|193396109|gb|FK361864.1|FK361864
genomic: GAGACTGGGGAAGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAGgtcttcatcc ... tgtatgtcagATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTGTGATATCCACTGGA
EST: ACCAATCTCAAGTTGCCACTCTAGT ATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTGEST: gi|193396109|gb|FK361864.1|FK361864
genomic: ACCAATCTCAAGTTGCCACTC-AG-gtcttcatcc ... tgtatgtcagATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTG
EST: ACCAATCTCAAGTTGCCACTCTAGT ATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTGEST: gi|151406975|gb|EV276790.1|EV276790
genomic: ACCAATCTCAAGTTGCCACTC-AG-gtcttcatcc ... tgtatgtcagATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTG
EST: GAGACTGGGGAAGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAG ATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTGTGATATCCACTGGAEST: gi|193724982|gb|FK659694.1|FK659694
genomic: GAGACTGGGGAAGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAGgtcttcatcc ... tgtatgtcagATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTGTGATATCCACTGGA
EST: GAGACTGGGGAAGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAG ATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTGTGATATCCACTGGAEST: gi|120534060|gb|EH262193.1|EH262193
genomic: GAGACTGGGGAAGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAGgtcttcatcc ... tgtatgtcagATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTGTGATATCCACTGGA
EST: GAGACTGGGGAAGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAG ATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTGTGATATCCACTGGAEST: gi|207712526|gb|GD694326.1|GD694326
genomic: GAGACTGGGGAAGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAGgtcttcatcc ... tgtatgtcagATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTGTGATATCCACTGGA
EST: GAGACTGGGGAAGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAG ATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTGTGATATCCACTGGAEST: gi|298163376|gb|HO012109.1|HO012109
genomic: GAGACTGGGGAAGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAGgtcttcatcc ... tgtatgtcagATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTGTGATATCCACTGGA
EST: GAGACTGGGGAAGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAG ATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTGTGATATCCACTGGAEST: gi|10237583|gb|BE806471.1|BE806471
genomic: GAGACTGGGGAAGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAGgtcttcatcc ... tgtatgtcagATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTGTGATATCCACTGGA
EST: GAGACTGGGGAAGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAG ATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTGTGATATCCACTGGAEST: gi|298197299|gb|HO044778.1|HO044778
genomic: GAGACTGGGGAAGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAGgtcttcatcc ... tgtatgtcagATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTGTGATATCCACTGGA
EST: GAGACTGGGGAAGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAG ATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTGTGATATCCACTGGAEST: gi|193668311|gb|FK608531.1|FK608531
genomic: GAGACTGGGGAAGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAGgtcttcatcc ... tgtatgtcagATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTGTGATATCCACTGGA
EST: GAGACTGGGGAGGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAG ATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTGTGATATCCACTGGAEST: gi|193528436|gb|FK485184.1|FK485184
genomic: GAGACTGGGGAAGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAGgtcttcatcc ... tgtatgtcagATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTGTGATATCCACTGGA
EST: GAGACTGGGGAAGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAG ATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTGTGATATCCACTGGAEST: gi|254314578|gb|GR829571.1|GR829571
genomic: GAGACTGGGGAAGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAGgtcttcatcc ... tgtatgtcagATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTGTGATATCCACTGGA
EST: GAGACTGGGGAAGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAG ATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTGTGATATCCACTGGAEST: gi|298189993|gb|HO032114.1|HO032114
genomic: GAGACTGGGGAAGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAGgtcttcatcc ... tgtatgtcagATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTGTGATATCCACTGGA
EST: GAGACTGGGGAAGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAG ATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTGTGATATCCACTGGAEST: gi|298178541|gb|HO024276.1|HO024276
genomic: GAGACTGGGGAAGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAGgtcttcatcc ... tgtatgtcagATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTGTGATATCCACTGGA
EST: GAGACTGGGGAAGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAG ATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTGTGATATCCACTGGAEST: gi|193434090|gb|FK400186.1|FK400186
genomic: GAGACTGGGGAAGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAGgtcttcatcc ... tgtatgtcagATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTGTGATATCCACTGGA
EST: GAGACTGGGGAAGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAG ATGGGAAGGGTTGCTGCAAAGTTEST: gi|298171038|gb|HO016070.1|HO016070
genomic: GAGACTGGGGAAGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAGgtcttcatcc ... tgtatgtcagATGGGAAGGGTTGCTGCAAAGTT
EST: GAGACTGGGGAAGGAAAGGAACATACAACCACTCTCAAGTTGCCACTCAG ATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTGTGATATCCACTGGAEST: gi|9987619|gb|BE661727.1|BE661727
genomic: GAGACTGGGGAAGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAGgtcttcatcc ... tgtatgtcagATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTGTGATATCCACTGGA
EST: GAGACTGGGGAAGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAG ATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTGTGATATCCACTGGAEST: gi|192299309|gb|FG990734.1|FG990734
genomic: GAGACTGGGGAAGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAGgtcttcatcc ... tgtatgtcagATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTGTGATATCCACTGGA
EST: GAGACTGGGGAAGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAG ATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTGTGATATCCACTGGAEST: gi|193558421|gb|FK515282.1|FK515282
genomic: GAGACTGGGGAAGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAGgtcttcatcc ... tgtatgtcagATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTGTGATATCCACTGGA
EST: GAGACTGGGGAAGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAG ATGGGAAGGGTTGCTGCAAAGTTAAGTATCGACTTTGTGATATCCACTGGAEST: gi|298170795|gb|HO015771.1|HO015771
genomic: GAGACTGGGGAAGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAGgtcttcatcc ... tgtatgtcagATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTGTGATATCCACTGGA
EST: GAGACTGGGGAAGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAG ATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTGTGATATCCACTGGAEST: gi|192328997|gb|FK019696.1|FK019696
genomic: GAGACTGGGGAAGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAGgtcttcatcc ... tgtatgtcagATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTGTGATATCCACTGGA
EST: GAGACTGGGGAAGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAG ATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTGTGATATCCACTGGAEST: gi|208077317|gb|GD877858.1|GD877858
genomic: GAGACTGGGGAAGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAGgtcttcatcc ... tgtatgtcagATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTGTGATATCCACTGGA
EST: GAGACTGGGGAAGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAG ATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTGTGATATCCACTGGAEST: gi|192301322|gb|FG990212.1|FG990212
genomic: GAGACTGGGGAAGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAGgtcttcatcc ... tgtatgtcagATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTGTGATATCCACTGGA
EST: GAGACTGGGGAAGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAG ATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTGTGATATCCACTGGAEST: gi|308098252|gb|HO759993.1|HO759993
genomic: GAGACTGGGGAAGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAGgtcttcatcc ... tgtatgtcagATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTGTGATATCCACTGGA
EST: GAGACTGGGGAAGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAG ATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTGTGATATCCACTGGA
genomic: GAGACTGGGGAAGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAGgtcttcatcc ... tgtatgtcagATGGGAAGGGTTGCTGCAAAGTTAAATATCGACTTTGTGATATCCACTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTAGAGCACCCTGTCAAAGCTGATGGCTCACTTAGCCTTATGGTCATTGGAGACTGGGGAAGGAAAGGAACATACAACCAATCTCAAGTTGCCACTCAGgtcttcatcctctatttagtgggaacttgtgttccagtattagtctagtagtctacttaactaagcacaagtttacaataattttttaattacgatacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA