1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATTTGCACACTCTTCCAAACATGATGGTGCTCTTAGCTTCTTGGTGCTTGGTGACTGGGGAAGAAGAGGTGCTTACAACCAATCACTAGTTGCTTTCCAGgtttgcttttatgtttgtgtgattcatgcaaatatgtgtgaaaactgaaaacttgtattccggcacattaattaatgttagattattttttatgttctagatagaatttcgtttatagcatctagttgctcctcgttgtagttattatcctcttcttttatggtgaaaaaatgaacttttcag
species | Glycine max |
transcript | GLYMA05G33630.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTGACTGGGGAAGAAGAGGTGCTTACAACCAATCACTAGTTGCTTTCCAG ATGGGAAAGGTTGGAGAGAAGCTTGATATCGACTTTGTAGTTTCCACTGGAEST: gi|298186779|gb|HO037412.1|HO037412
genomic: GTGACTGGGGAAGAAGAGGTGCTTACAACCAATCACTAGTTGCTTTCCAGgtttgctttt ... aacttttcagATGGGAAAGGTTGGAGAGAAGCTTGATATCGACTTTGTAGTTTCCACTGGA
EST: GTGACTGGGGAAGAAGAGGTGCTTACAACCAATCACTAGTTGCTTTCCAG ATGGGAAAGGTTGGAGAGAAGCTTGATATCGACTTTGTAGTTTCCACTGGAEST: gi|192322964|gb|FK016695.1|FK016695
genomic: GTGACTGGGGAAGAAGAGGTGCTTACAACCAATCACTAGTTGCTTTCCAGgtttgctttt ... aacttttcagATGGGAAAGGTTGGAGAGAAGCTTGATATCGACTTTGTAGTTTCCACTGGA
EST: GTGACTGGGGAAGAAGAGGTGCTTACAACCAATCACTAGTTGCTTTCCAG ATGGGAAAGGTTGGAGAGAAGCTTGATATCGACTTTGTAGTTTCCACTGGAEST: gi|298192643|gb|HO033077.1|HO033077
genomic: GTGACTGGGGAAGAAGAGGTGCTTACAACCAATCACTAGTTGCTTTCCAGgtttgctttt ... aacttttcagATGGGAAAGGTTGGAGAGAAGCTTGATATCGACTTTGTAGTTTCCACTGGA
EST: GTGACTGGGGAAGAAGAGGTGCTTACAACCAATCACTAGTTGCTTTCCAG ATGGGAAAGGTTGGAGAGAAGCTTGATATCGACTTTGTAGTTTCCACTGGA
genomic: GTGACTGGGGAAGAAGAGGTGCTTACAACCAATCACTAGTTGCTTTCCAGgtttgctttt ... aacttttcagATGGGAAAGGTTGGAGAGAAGCTTGATATCGACTTTGTAGTTTCCACTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTGCACACTCTTCCAAACATGATGGTGCTCTTAGCTTCTTGGTGCTTGGTGACTGGGGAAGAAGAGGTGCTTACAACCAATCACTAGTTGCTTTCCAGgtttgcttttatgtttgtgtgattcatgcaaatatgtgtgaaaactgaaaacttgtattccggcacattaattaatgttagattattttttatgttctagatagaatttcgtttatagcatctagttgctcctcgttgtagttattatcctcttcttttatggtgaaaaaatgaacttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG