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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCGAGATGGACCAACCTCAAAACTCCCTGGTGCTGATAGCACTTTGCTTATTGGTTCGTATCTGGATGTACCTATCGGACAGGAAATTAACCCTTCAGgttagcttatatttacagggattaaattttttcatatgatcacaattgtttagtggtttcccttttgggcttaatagcagctgcatatgttgtttggtca...

Basic information

species Glycine max
transcript GLYMA05G33560.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G33560.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv01s0011g01590.t01 (Vitis vinifera), 5'ss of exon 6
GAGCGAGATGGACCAACCTCAAAACTCCCTGGTGCTGATAGCACTTTGCTTATTGGTTCGTATCTGGATGTACCTATCGGACAGGAAATTAACCCTTCAGgttagcttatat--ttacagggattaaattttttcatatgatcacaattgtttagtggtttcccttttgggcttaatagcagctgcatatgttgtttggtca
||||  || |||||    || ||  |  ||||||  ||||   | || ||||| || |||||||||||||| || || ||||| ||||| ||| |||||||||||| | | |  | |    ||| | ||  |         ||| | |    |  |  |||   | ||   |||   |  |     |||  ||| |   |  
GAGCATGAGGGACCTGGTTCTAAGATTGCTGGTGTAGATAATGCGTTTCTTATAGGGTCGTATCTGGATGTTCCCATTGGACAAGAAATCAACTCTTCAGgttagcatgtgtaatgaatatgatcagataatgcttatcactcaaactaaactttttttttttttgtttaacttggaa--aatataatagcttgctgaatag