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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCGTGGAGCTGTGTATTGGGAACCCAACAAGCCTCTCACCATCGAGGAATTTAACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACCAAAGgtaagggtacccttcaattcttgtgcatccacaacgttaatggcaacaagggtcttccccgaaattcaattttttaattttattttttgttattatctac...

Basic information

species Glycine max
transcript GLYMA05G33140.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G33140.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os08g01760.1 (Oryza sativa), 5'ss of exon 1
ATGCGTGGAGCTGTGTATTGGGAACCCAACAAGCCTCTCACCATCGAGGAATTTAACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACCAAAGgtaagggtacccttcaattcttgtgcatccacaacgttaatggcaacaagggtcttccccgaaattc---aattttttaattttattttttgttattatctac--
||||| || || ||||  ||||| |||  |   ||||||||| ||||||| ||   |||||| |||||||||||||| ||  | |||||||| |||||||||      |   | ||    |    | ||  |  |      |       |  ||||        | |   |||| || |   | |   |     | | | | |  
ATGCGCGGCGCGGTGTTCTGGGAGCCCGGCCGCCCTCTCACCCTCGAGGACTTCCGCATGCCGCGCCCCAAGGCCGGCGAGCTCCTCATCAAGACCAAAGgtcgcatcat--tgcagccatctatcgtctgctgctcctgcgtttctttgtttctttgtttgtttcctcgaattattgaggctgacgctggcccaatctgtgcag

upper sequence: GLYMA05G33140.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G63620.2 (Arabidopsis thaliana), 5'ss of exon 1
ATGCGTGGAGCTGTGTATTGGGAACCCAACAAGCCTCTCACCATCGAGGAATTTAACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACCAAAGgtaagggtacccttcaattcttgtgcatccacaacgttaatggcaacaagggtcttccccgaaattcaattttttaattttattttttgttattatctac
||||||||||| |||||| | || ||||| |||||||| |||||||| |||||| | || || ||||||||  ||  |||| ||||||||||||||||||||     |   ||||| ||  || |  |  |     | |||      | |  ||        ||    | | || | |||  ||| | |  |        
ATGCGTGGAGCCGTGTATCGCGAGCCCAATAAGCCTCTAACCATCGAAGAATTTCATATTCCCCGCCCCAAATCCAATGAAATTCTCATCAAAACCAAAGgt-----tcttcttcattttctgggatttgattgaatcaat--ttgtaggattcgagttttgaaagttagtattcattttcgtttgtgggcag-------

upper sequence: GLYMA05G33140.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv07s0031g03150.t01 (Vitis vinifera), 5'ss of exon 1
ATGCGTGGAGCTGTGTATTGGGAACCCAACAAGCCTCTCACCATCGAGGAATTTAACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACCAAAGgtaagggtacccttcaattcttgtgcatccacaacgttaatggcaacaagggtcttccccgaaat--tcaattttttaattttattttttgttattatctac
||||| ||||| |||| ||||||    |||| ||||||||||||||| || ||  ||||||||||||| ||||| || |||||||||||||||||||||||| |     ||  || | |    | | |    |   ||| |     |    |   || | |||||  ||   ||   | ||  ||   || |    || || 
ATGCGCGGAGCAGTGTTTTGGGAGGTTAACAGGCCTCTCACCATCGAAGATTTCCACATGCCTCGCCCTAAGGCTGGAGAAGTTCTCATCAAAACCAAAGgtcaaatctccactccacttcactacgttt-tatttttatttttttccccagaaatctcagaaatgatcggcttggaatttgaatgagttttctgaattta-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5753618|gb|AI960905.1|AI960905
EST:     ATTTAACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACCAAAG                         CCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGT
genomic: ATTTAACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACCAAAGgtaagggtac ... tttggtgtagCCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGT
EST: gi|14258428|gb|BG881336.1|BG881336
EST:     TTTCACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAA-CAAAGG                         CCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCG
genomic: TTTAACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACCAAA-Ggtaagggtac ... tttggtgtagCCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCG
EST: gi|209704779|gb|BW673431.1|BW673431
EST:     ATTTAACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACCAAAG                         CCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGT
genomic: ATTTAACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACCAAAGgtaagggtac ... tttggtgtagCCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGT
EST: gi|213608120|gb|DB970801.1|DB970801
EST:     ATTTAACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACCAAAG                         CCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGT
genomic: ATTTAACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACCAAAGgtaagggtac ... tttggtgtagCCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGT
EST: gi|9203970|gb|BE330194.1|BE330194
EST:     ATTTAACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACCAAAG                         CCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGT
genomic: ATTTAACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACCAAAGgtaagggtac ... tttggtgtagCCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGT
EST: gi|298166732|gb|HO010171.1|HO010171
EST:     ATTTAACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACCAAAG                         CCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGT
genomic: ATTTAACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACCAAAGgtaagggtac ... tttggtgtagCCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGT
EST: gi|298164571|gb|HO014216.1|HO014216
EST:     ATTTAACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACCAAAG                         CCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGT
genomic: ATTTAACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACCAAAGgtaagggtac ... tttggtgtagCCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGT
EST: gi|151395988|gb|EV265865.1|EV265865
EST:     ATTTAACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACCAAAG                         CCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGT
genomic: ATTTAACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACCAAAGgtaagggtac ... tttggtgtagCCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGT
EST: gi|209717619|gb|BW679699.1|BW679699
EST:     ATTTAACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACCAAAG                         CCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGT
genomic: ATTTAACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACCAAAGgtaagggtac ... tttggtgtagCCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGT