1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TCAATTTGAATTTCGTTCAATCTGATTTTCGCTTCTCTGGTTACAATGTTGCACATTGCTTTAGCTGCACCGGTCTCTCCCACCGTCGTCGCTTTTCACCgtatgttatcttcttcatcttcctctatcattcatcatttcacccactcacaactacgagaaaaccgggggaaagttatcggtgtttttatttttttattttttctacttttaataattacattgcatcagcattatcgttgctgtttcag
species | Glycine max |
transcript | GLYMA05G32900.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCACATTGCTTTAGCTGCACCGGTCTCTCCCACCGTCGTCGCTTTTCACC GCGGAGCGAAGCAATGGAGCGCGCTAATTCCGAATTTTCGGAGAAGCAGGGEST: gi|5606310|gb|AI900399.1|AI900399
genomic: GCACATTGCTTTAGCTGCACCGGTCTCTCCCACCGTCGTCGCTTTTCACCgtatgttatc ... gctgtttcagGCGGAGCGAAGCAATGGAGCGCGCTAATTCCGAATTTTCGGAGAAGCAGGG
EST: GCACATTGCTTTAGCTGCACCGGTCTCTCCCACCGTCGTCGCTTTTCACC GCGGAGCGAAGCAATGGAGCGCGCTAATTCCGAATTTTCGGAGAAGCAGGGEST: gi|213619618|gb|DB965564.1|DB965564
genomic: GCACATTGCTTTAGCTGCACCGGTCTCTCCCACCGTCGTCGCTTTTCACCgtatgttatc ... gctgtttcagGCGGAGCGAAGCAATGGAGCGCGCTAATTCCGAATTTTCGGAGAAGCAGGG
EST: GCACATTGCTTTAGCTGCACCGGTCTCTCCCACCGTCGTCGCTTTTCACC GCGGAGCGAAGCAATGGAGCGCGCTAATTCCGAATTTTCGGAGAAGCAGGGEST: gi|213607376|gb|DB967085.1|DB967085
genomic: GCACATTGCTTTAGCTGCACCGGTCTCTCCCACCGTCGTCGCTTTTCACCgtatgttatc ... gctgtttcagGCGGAGCGAAGCAATGGAGCGCGCTAATTCCGAATTTTCGGAGAAGCAGGG
EST: GCACATTGCTTTAGCTGCACCGGTCTCTCCCACCGTCGTCGCTTTTCACC GCGGAGCGAAGCAATGGAGCGCGCTAATTCCGAATTTTCGGAGAAGCAGGG
genomic: GCACATTGCTTTAGCTGCACCGGTCTCTCCCACCGTCGTCGCTTTTCACCgtatgttatc ... gctgtttcagGCGGAGCGAAGCAATGGAGCGCGCTAATTCCGAATTTTCGGAGAAGCAGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAATTTGAATTTCGTTCAATCTGATTTTCGCTTCTCTGGTTACAATGTTGCACATTGCTTTAGCTGCACCGGTCTCTCCCACCGTCGTCGCTTTTCACCgtatgttatcttcttcatcttcctctatcattcatcatttcacccactcacaactacgagaaaaccgggggaaagttatcggtgtttttatttttttattttttctacttttaataattacattgcatcagcattatcgttgctgtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC