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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCGCTGGCGTCTACAAAGGCGTCACCACTAGCCAGCTCGATGAGTTGGCGGCGGAAACCGCCGCGGCTATGACCGCCAACCACCCTGACTATGCTTCTgtgagattcttctcttttctcgcgctttttttgtggttcatattatggcttaaaggctgatctgtgtgattttgtgtttggtgcag

Basic information

species Glycine max
transcript GLYMA05G32070.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G32070.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os02g56100.1 (Oryza sativa), 5'ss of exon 1
GTGCGCTGGCGTCTACAAAGGCGTCACCACTAGCCAGCTCGATGAGTTGGCGGCGGAAACCGCCGCGGCTATGACCGCCAACCACCCTGACTATGCTTCTgtgagattcttctctttt--ctcgcgctttttttgtggtt-catattatggcttaaaggctgat--ctg--tgtgattttgtgtttggtgcag-------
 ||||| ||||||||||| ||||||||||| ||||||||||  ||| | |||||||| |||||||| || |||||||||  |||||| ||||| || || || ||   || | |   |    ||  |  |    | |||    |     |     | || |  |  |||  ||||    ||  |    | ||        
CTGCGCCGGCGTCTACAAGGGCGTCACCACCAGCCAGCTCGGCGAGCTCGCGGCGGAGACCGCCGCCGCCATGACCGCCTCCCACCCCGACTACGCCTCGgtaaggccctccgcgactgatccgtacgctacacgcggtcgtctggggcgatccgatggttattgactggatgtggcgctgattcatttacactgtgaag

upper sequence: GLYMA05G32070.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G304362_T01 (Zea mays), 5'ss of exon 1
GTGCGCTGGCGTCTACAAAGGCGTCACCACTAGCCAGCTCGATGAGTTGGCGGCGGAAACCGCCGCGGCTATGACCGCCAACCACCCTGACTATGCTTCTgtgagattcttctcttttctcgcgctttttttgtggttcatattatggcttaaaggctgatctgtgtgattttgtgtttggtgcag-------------------------------------------
 || || || |||||||| ||||||||||| ||||||||||| ||| | || || || ||||||||||| ||||||||   |||||| ||||| || || |||||   |    |        | | |    | |||      ||   |||     |    ||||| ||  ||| ||| || ||| |                                           
CTGTGCGGGGGTCTACAAGGGCGTCACCACCAGCCAGCTCGACGAGCTCGCCGCCGAGACCGCCGCGGCCATGACCGCGTCCCACCCCGACTACGCCTCGgtgagtaacccaccccgaaatcctcctcccctctggccttggtttcagctctcctgtctgtctgtctgtctttctgtctg-tgctgacgtggggttggttgcccctgttctctgtcgtgattcgtgaag

upper sequence: GLYMA05G32070.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G340527_T01 (Zea mays), 5'ss of exon 1
GTGCGCTGGCGTCTACAAAGGCGTCACCACTAGCCAGCTCGATGAGTTGGCGGCGGAAACCGCCGCGGCTATGACCGCCAACCACCCTGACTATGCTTCTgtgag-attcttctcttttctcgcgctttttttgtggttcatat-tatggcttaaagg--ctgatctgtg--tgattttgtgtttggtgcag--------------
 ||||| || |||||||| ||||||||||| ||||||||||| ||| | || || || ||||| ||||| ||||| ||   |||||| ||||| || || ||||| |  |  |  |    || | | ||  ||     ||  || | || |||    |  ||||  || |  || |||  | | |  |  |               
CTGCGCGGGGGTCTACAAGGGCGTCACCACCAGCCAGCTCGACGAGCTCGCCGCCGAGACCGCGGCGGCCATGACTGCGTCCCACCCCGACTACGCCTCGgtgaggaacccaccgtgaaatccccccttggtttcaactctcatgtctgtctttgttgtcctgacgtggggttggtttcctctcttctctatcgtgattcgtgaag

upper sequence: GLYMA05G32070.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 1
GTGCGCTGGCGTCTACAAAGGCGTCACCACTAGCCAGCTCGATGAGTTGGCGGCGGAAACCGCCGCGGCTATGACCGCCAACCACCCTGACTATGCTTCTgtgagattcttctctttt--ctcgcgctttttttgtggttcatatta------tggcttaaaggctgatctgtg-tgatttt--gtgtttggtgcag---
||||||||| |||||||| |||||||| || |||||||| ||||| ||||| || ||||||||||| |||||||| ||||| ||||| || ||||| || ||  | || |   |||||   ||   |||||| |    ||  | |||      | | ||||  | | ||  ||| | |||||      ||||| | |   
GTGCGCTGGGGTCTACAAGGGCGTCACTACCAGCCAGCTTGATGAATTGGCCGCTGAAACCGCCGCTGCTATGACTGCCAATCACCCCGATTATGCCTCGgttggtttttctccttttatttctttctttttctccattttgtcttaaatacataggttaattgattatgggtggtcatttttgaaacttggttctgttt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18040033|gb|BM308327.1|BM308327
EST:     CGGCGGAAACCGCCGCGGCTATGACCGCCAACCACCCTGACTATGCTTCT                         TTGGCTGCGAGGATTGCCGTTTCAAATCTGCACAAGAATACGAAGAAGTCA
genomic: CGGCGGAAACCGCCGCGGCTATGACCGCCAACCACCCTGACTATGCTTCTgtgagattct ... tttggtgcagTTGGCTGCGAGGATTGCCGTTTCAAATCTGCACAAGAATACGAAGAAGTCA
EST: gi|213597822|gb|DB960379.1|DB960379
EST:     CGGCGGAAACCGCCGCGGCTATGACCGCCAACCACCCTGACTATGCTTCT                         TTGGCTGCGAGGATTGCCGTTTCAAATCTGCACAAGAATACGAAGAAGTCA
genomic: CGGCGGAAACCGCCGCGGCTATGACCGCCAACCACCCTGACTATGCTTCTgtgagattct ... tttggtgcagTTGGCTGCGAGGATTGCCGTTTCAAATCTGCACAAGAATACGAAGAAGTCA
EST: gi|298179131|gb|HO027602.1|HO027602
EST:     CGGCGGAAACCGCCGCGGCTATGACCGCCAACCACCCTGACTATGCTTCT                         TTGGCTGCGAGGATTGCCGTTTCAAATCTGCACAAGAATACGAAGAAGTCA
genomic: CGGCGGAAACCGCCGCGGCTATGACCGCCAACCACCCTGACTATGCTTCTgtgagattct ... tttggtgcagTTGGCTGCGAGGATTGCCGTTTCAAATCTGCACAAGAATACGAAGAAGTCA