Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCGCCAAATACAAGCTCGTTTTCTTGGGCGATCAATCCGTTGGCAAAACCAGCATCATCACCCGCTTCATGTACGACAAATTCGACACCACCTACCAGgtcacattcattctcaatctcaatctcattttcaatttctttttcatttgccgttgatctctctatttacgacatgcattttatttatgcatgtgctttc...

Basic information

species Glycine max
transcript GLYMA05G31200.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G31200.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os03g09140.1 (Oryza sativa), 5'ss of exon 1
TCTCGCCAAATACAAGCTCGTTTTCTTGGGCGATCAATCCGTTGGCAAAACCAGCATCATCACCCGCTTCATGTACGACAAATTCGACACCACCTACCAGgt----------cacattcattctcaatc--tcaatctcattttc------aatttctttttcatttgccgttgatctctctatttacgacatgcattttatt-tatgcatgtgctttc---------------------
 || ||||| |||||||| || ||| | ||||| ||  | || || || ||   ||||||||||||||||||||||||||| |||||| |||||||||||||          | |   | | | | |||  || |||| |    |       | |||   ||  ||| |  ||     |    |||     ||| |||| |   | | |||||  || |                     
GCTGGCCAAGTACAAGCTGGTGTTCCTCGGCGACCAGGCGGTGGGGAAGACGGCCATCATCACCCGCTTCATGTACGACAAGTTCGACGCCACCTACCAGgttcgttgatgtcgcgcgcgtccccgatcgatcgatcttacgcgctggagagagttccagttttttttcttttttgggcaaggtttgttcgatgaatttgacggtgttcatgttgttgcggcggcggcggcggcgtgcag

upper sequence: GLYMA05G31200.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G128771_T01 (Zea mays), 5'ss of exon 1
TCTCGCCAAATACAAGCTCGTTTTCTTGGGCGATCAATCCGTTGGCAAAACCAGCATCATCACCCGCTTCATGTACGACAAATTCGACACCACCTACCAGgtcacattcattctcaatctcaatctcattttcaatttctttttcatttgc-cgttgatctctctattta-cgacatgcattttatttatgcatgtgctttc
 || ||||| ||||| || || ||| | ||||| || ||||| ||||| ||||||||||||||| | |||||||||||||| |||||||||||||||||||| ||    |     ||||  |    ||| | ||   |||  | | |  || ||  ||||  | ||   | ||   ||  |   |||    |   ||  | |
GCTGGCCAAGTACAAACTGGTGTTCCTCGGCGACCAGTCCGTGGGCAAGACCAGCATCATCACCAGATTCATGTACGACAAGTTCGACACCACCTACCAGgtaaccgagaccgcgaatcgta--tccatatccaccgtctcgtccgtgcgcgcggcgatcgatttaccgatcgttgtgtctacaattgcatcgattgtgtcc

upper sequence: GLYMA05G31200.1 (Glycine max), 5'ss of exon 1
lower sequence: AC166636.1_FGT008 (Zea mays), 5'ss of exon 1
TCTCGCCAAATACAAGCTCGTTTTCTTGGGCGATCAATCCGTTGGCAAAACCAGCATCATCACCCGCTTCATGTACGACAAATTCGACACCACCTACCAGgtca-----cattcattctcaatctcaa--tctcattttcaatttctttttcatttgccgttgatctctctatttacga-catgcattttatttatgcatgtgctttc---------------------------------------------------------
 || ||||| ||||||||||| ||| ||||| | ||  | || ||||| ||   ||||||||||||||||||||||||||| ||||||  |||||||||||||      |   |     | ||||     || ||| | |    ||   |   ||| | |      ||  |  |   || | ||   |  |  | ||  | ||   |                                                          
GCTGGCCAAGTACAAGCTCGTGTTCCTGGGCAACCAGGCGGTGGGCAAGACGGCCATCATCACCCGCTTCATGTACGACAAGTTCGACGACACCTACCAGgtcggtctccgcccgccgacgatcttcggctcccatctccctcgtcccgtatgttttcaggcaggatcattgctactgaacctgtcgtcgaaatctgactctgacctgtgggtccgtgctgctgccgccgccgccgctatatccgctcccccgtgcgtgatgcag

upper sequence: GLYMA05G31200.1 (Glycine max), 5'ss of exon 1
lower sequence: AT2G22290.1 (Arabidopsis thaliana), 5'ss of exon 1
TCTCGCCAAATACAAGCTCGTTTTCTTGGGCGATCAATCCGTTGGCAAAACCAGCATCATCACCCGCTTCATGTACGACAAATTCGACACCACCTACCAGgtcacattcattctca-atctcaatctcattttcaatttctttttcatttgccgttgat-ctctct-atttacgacatgcattttatttatgcatgtgctttc
  | || ||||| || || || ||||| || |||||||| || |||||||||||||||||||| || |||||||| || || |||||||| ||||||||||| | ||  |    || |||      ||  ||||  | | |||    ||||   || || || ||| ||||   || |   ||||  | ||  |       | 
ATTAGCGAAATATAAACTGGTGTTCTTAGGAGATCAATCTGTCGGCAAAACCAGCATCATCACTCGTTTCATGTATGATAAGTTCGACACAACCTACCAGgttaaatctaaaaccacatcgatgattctgtttctctgtttttgctgtttgattttaattctgtctcatttttaacgt---ttttgatcatcgaaacaacatt

upper sequence: GLYMA05G31200.1 (Glycine max), 5'ss of exon 1
lower sequence: AT4G39890.1 (Arabidopsis thaliana), 5'ss of exon 1
TCTCGCCAAATACAAGCTCGTTTTCTTGGGCGATCAATCCGTTGGCAAAACCAGCATCATCACCCGCTTCATGTACGACAAATTCGACACCACCTACCAGgt---cacattcattctcaatctcaatctcattt-tcaatttctttttcatttgccgttgatctctctatttacgacatgcattttatttatgcatgtgctttc
| | || || |  || || || ||||| || || ||||| || || ||||||||||||||||| || |||||||| ||||||||||||||||| ||||||||    |||   ||||          | |  ||| |  ||||   ||    |   ||   |    | | |||      | | |||| ||  ||  ||  ||   
TTTGGCAAAGTTTAAACTGGTGTTCTTAGGAGACCAATCTGTCGGAAAAACCAGCATCATCACTCGTTTCATGTATGACAAATTCGACACCACGTACCAGgtatttacacagattcctttcacttgttttgtttattcatttaaattcttctctgcgacaacaagtttctttt--gttttcgtttttttattgtttgatctg--

upper sequence: GLYMA05G31200.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G10260.1 (Arabidopsis thaliana), 5'ss of exon 1
TCTCGCCAAATACAAGCTCGTTTTCTTGGGCGATCAATCCGTTGGCAAAACCAGCATCATCACCCGCTTCATGTACGACAAATTCGACACCACCTACCAGgtcacat--tcattctcaatctcaatctcattttcaatttctttt--tcatttgccgttgatctctctatttacgacatgcattttatttatgcatgtgctttc-------------------------------------------------------------------------
  | || || ||||||||||| ||| | || ||||||||||||||||| |||||||||||||| || |||||||||||||||||||| ||||| || |||||   ||  |  |  || ||| || ||||  |   ||||  ||||  ||  ||| |  |||  ||     |   |       | | ||  ||| ||  | ||                                                                           
ATTAGCAAAGTACAAGCTCGTGTTCCTTGGAGATCAATCCGTTGGCAAGACCAGCATCATCACTCGTTTCATGTACGACAAATTCGATACCACTTATCAGgttggatcattttcttctatccca-tctcgatcaaaattaattttgatccattgtctgtgagatccacgatcctgttgc---tgtaatgaatggatcagattcagaattgctagaaactcatagcattgtgttcattggatcaaattctgatattagttatggtgtttttgttgcag