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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCGACGAGATGAAGCGCCGATTGAAGGAAATGGAAGAGGAAGCCGCAGCGCTTCGCGAGATGCAAGCCAAGGTCGATAAGGAGATTGGCAGCGTTCAAGgtttttcattatcctcattttaattcgtcaactttatcttatactcgttcggtcaatcgctattcagaagcttaatcatattttatgacagttgataaaa...

Basic information

species Glycine max
transcript GLYMA05G31030.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193708956|gb|FK646496.1|FK646496
EST:     GCTTCGCGAGATGCAAGCCAAGGTCGATAAGGAGATTGGCAGCGTTCAAG                         ATCCTGCTAATTCAGCTGCTTCT
genomic: GCTTCGCGAGATGCAAGCCAAGGTCGATAAGGAGATTGGCAGCGTTCAAGgtttttcatt ... tgttttgcagATCCTGCTAATTCAGCTGCTTCT
EST: gi|208215175|gb|GE012372.1|GE012372
EST:     CGAGATGCAAGCCAAGGTCGATAAGGAGATTGGCAGCGTTCAAG                         ATCCTGCTAATTCAGCTGCTTCTCAGGCAAACAAGGAGGAGGCAGATTCTC
genomic: CGAGATGCAAGCCAAGGTCGATAAGGAGATTGGCAGCGTTCAAGgtttttcatt ... tgttttgcagATCCTGCTAATTCAGCTGCTTCTCAGGCAAACAAGGAGGAGGCAGATTCTC
EST: gi|193705269|gb|FK643093.1|FK643093
EST:     GCTTCGCGAGATGCAAGCCAAGGTCGAGAAGGAGATTGGCAGCGTTCAAG                         ATCCTGCTAATGCAGCTGCTTCTCAGGCAAACAAGGAGGAGGCAGATGCTC
genomic: GCTTCGCGAGATGCAAGCCAAGGTCGATAAGGAGATTGGCAGCGTTCAAGgtttttcatt ... tgttttgcagATCCTGCTAATTCAGCTGCTTCTCAGGCAAACAAGGAGGAGGCAGATTCTC
EST: gi|7686310|gb|AW756886.1|AW756886
EST:     GCTTCGCGAGATGCAAGCCAAGGTCGAGAAGGAGATTGGCAGCGTTCAAG                         ATCCTGCTAATGCAGCTGCTTCTCAGGCAAACAAGGAGGAGGCAGATGCTC
genomic: GCTTCGCGAGATGCAAGCCAAGGTCGATAAGGAGATTGGCAGCGTTCAAGgtttttcatt ... tgttttgcagATCCTGCTAATTCAGCTGCTTCTCAGGCAAACAAGGAGGAGGCAGATTCTC
EST: gi|192304231|gb|FG993529.1|FG993529
EST:     GCTTCGCGAGATGCAAGCCAAGGTCGATAAGGAGATTGGCAGCGTTCAAG                         ATCCTGCTAATTCAGCTGCTTCTCAGGCAAACAAGGAGGAGGCAGATTCTC
genomic: GCTTCGCGAGATGCAAGCCAAGGTCGATAAGGAGATTGGCAGCGTTCAAGgtttttcatt ... tgttttgcagATCCTGCTAATTCAGCTGCTTCTCAGGCAAACAAGGAGGAGGCAGATTCTC
EST: gi|208204768|gb|GE005669.1|GE005669
EST:     GCTTCGCGAGATGCAAGCCAAGGTCGATAAGGAGATTGGCAGCGTTCAAG                         ATCCTGCTAATTCAGCTGCTTCTCAGGCAAACAAGGAGGAGGCAGATTCTC
genomic: GCTTCGCGAGATGCAAGCCAAGGTCGATAAGGAGATTGGCAGCGTTCAAGgtttttcatt ... tgttttgcagATCCTGCTAATTCAGCTGCTTCTCAGGCAAACAAGGAGGAGGCAGATTCTC
EST: gi|208292012|gb|GE090684.1|GE090684
EST:     GCTTCGCGAGATGCAAGCCAAGGTCGATAAGGAGATTGGCAGCGTTCAAG                         ATCCTGCTAATTCAGCTGCTTCTCAGGCAAACAAGGAGGAGGCAGATTCTC
genomic: GCTTCGCGAGATGCAAGCCAAGGTCGATAAGGAGATTGGCAGCGTTCAAGgtttttcatt ... tgttttgcagATCCTGCTAATTCAGCTGCTTCTCAGGCAAACAAGGAGGAGGCAGATTCTC
EST: gi|193578737|gb|FK538097.1|FK538097
EST:     AAGGAGATTGGCAGCGTTCAAG                         ATCCTGCTAATGCAGCTGCTTCTCAGGCAAACAAGGAGGAGGCAGATGCTC
genomic: AAGGAGATTGGCAGCGTTCAAGgtttttcatt ... tgttttgcagATCCTGCTAATTCAGCTGCTTCTCAGGCAAACAAGGAGGAGGCAGATTCTC
EST: gi|192295407|gb|FG987021.1|FG987021
EST:     GCTTCGCGAGATGCAAGCCAAGGTCGATAAGGAGATTGGCAGCGTTCAAG                         ATCCTGCTAATTCAGCTGCTTCTCAGGCAAACAAGGAGGAGGCAGATTCTC
genomic: GCTTCGCGAGATGCAAGCCAAGGTCGATAAGGAGATTGGCAGCGTTCAAGgtttttcatt ... tgttttgcagATCCTGCTAATTCAGCTGCTTCTCAGGCAAACAAGGAGGAGGCAGATTCTC
EST: gi|208127439|gb|GD925815.1|GD925815
EST:     GCTTCGCGAGATGCAAGCCAAGGTCGATAAGGAGATTGGCAGCGTTCAAG                         ATCCTGCTAATTCAGCTGCTTCTCAGGCAAACAAGGAGGAGGCAGATTCTC
genomic: GCTTCGCGAGATGCAAGCCAAGGTCGATAAGGAGATTGGCAGCGTTCAAGgtttttcatt ... tgttttgcagATCCTGCTAATTCAGCTGCTTCTCAGGCAAACAAGGAGGAGGCAGATTCTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTCGACGAGATGAAGCGCCGATTGAAGGAAATGGAAGAGGAAGCCGCAGCGCTTCGCGAGATGCAAGCCAAGGTCGATAAGGAGATTGGCAGCGTTCAAGgtttttcattatcctcattttaattcgtcaactttatcttatactcgttcggtcaatcgctattcagaagcttaatcatattttatgacagttgataaaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT